PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c21_2850V3.3.p

Common Name

PHYPADRAFT_70176

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 398aa MW: 43245 Da PI: 6.5911

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c21_2850V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	34.2	5.5e-11	1	23	33	55
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m+vkgLtl+h+kSHLQkYRl Pp3c21_2850V3.3.p 1 MRIMGVKGLTLYHLKSHLQKYRL 23 789*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-10	1	24	IPR009057	Homeodomain-like
Pfam	PF14379	2.6E-20	65	111	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MRIMGVKGLT LYHLKSHLQK YRLGKQLTRD QHFHNKDGNS DLQRSNSLSD GGMAQKSQNM 60 QHGLQMSEAI QLQLEVQQRL QDQLEVQRHL QMRIEAQGKY LQAILQKAKE TLASHTSESP 120 GLEAAHAELT ELASKVTTVG YLSDFSNLGM PPMAQPDPLM ALHELPRQPS RNSDTSSQKS 180 FLTNLTGNAE DSGAVSGSGE PRGLTEDEDG VGQESSAQFH EEMSANRLHP QGSGNSRGFQ 240 GGLAHAATTT ALAGVVPSSS SHCNPITSFW HMNSFQNMTS SPMSGSLCEV VQDYRTDNSN 300 PNQLANSLIM ERLSSSQGVG IHHLSGMHHT QNGLGFMHGG STSASYTSLQ DLYCSSGDTL 360 RGGLVKAEMN LAERNHIIQC RGSELDLNSG WERYISS*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MRIMGVKGLT LYHLKSHLQK YRLGKQLTRD QHFHNKDGNS DLQRSNSLSD GGMAQKSQNM  60
QHGLQMSEAI QLQLEVQQRL QDQLEVQRHL QMRIEAQGKY LQAILQKAKE TLASHTSESP  120
GLEAAHAELT ELASKVTTVG YLSDFSNLGM PPMAQPDPLM ALHELPRQPS RNSDTSSQKS  180
FLTNLTGNAE DSGAVSGSGE PRGLTEDEDG VGQESSAQFH EEMSANRLHP QGSGNSRGFQ  240
GGLAHAATTT ALAGVVPSSS SHCNPITSFW HMNSFQNMTS SPMSGSLCEV VQDYRTDNSN  300
PNQLANSLIM ERLSSSQGVG IHHLSGMHHT QNGLGFMHGG STSASYTSLQ DLYCSSGDTL  360
RGGLVKAEMN LAERNHIIQC RGSELDLNSG WERYISS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024358801.1	0.0	protein PHR1-LIKE 2-like isoform X2
Refseq	XP_024358802.1	0.0	protein PHR1-LIKE 2-like isoform X2
TrEMBL	A0A2K1IQI6	0.0	A0A2K1IQI6_PHYPA; Uncharacterized protein
STRING	PP1S27_9V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	7e-35	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c21_2850V3.3.p
Entrez Gene	5920553

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]