PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_2850V3.1.p
Common NamePHYPADRAFT_70176
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 480aa    MW: 52334.5 Da    PI: 6.9931
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_2850V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.82.8e-3451105155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kprlrWtpeLHerFv+av+qLGG++kAtPk+++++m+vkgLtl+h+kSHLQkYRl
  Pp3c21_2850V3.1.p  51 KPRLRWTPELHERFVDAVTQLGGADKATPKSVMRIMGVKGLTLYHLKSHLQKYRL 105
                        79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.40348108IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-3348106IPR009057Homeodomain-like
SuperFamilySSF466895.02E-1751106IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-2451106IPR006447Myb domain, plants
PfamPF002491.0E-853104IPR001005SANT/Myb domain
PfamPF143793.4E-20147193IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MFPMKKYMSP GTFQQRPRST GSLYIPEKLQ SPYGSVMNGG DMVPLSPADP KPRLRWTPEL  60
HERFVDAVTQ LGGADKATPK SVMRIMGVKG LTLYHLKSHL QKYRLGKQLT RDQHFHNKDG  120
NSDLQRSNSL SDGGMAQKSQ NMQHGLQMSE AIQLQLEVQQ RLQDQLEVQR HLQMRIEAQG  180
KYLQAILQKA KETLASHTSE SPGLEAAHAE LTELASKVTT VGYLSDFSNL GMPPMAQPDP  240
LMALHELPRQ PSRNSDTSSQ KSFLTNLTGN AEDSGAVSGS GEPRGLTEDE DGVGQESSAQ  300
FHEEMSANRL HPQGSGNSRG FQGGLAHAAT TTALAGVVPS SSSHCNPITS FWHMNSFQNM  360
TSSPMSGSLC EVVQDYRTDN SNPNQLANSL IMERLSSSQG VGIHHLSGMH HTQNGLGFMH  420
GGSTSASYTS LQDLYCSSGD TLRGGLVKAE MNLAERNHII QCRGSELDLN SGWERYISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-2151107157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-2151107157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-2151107157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-2151107157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358799.10.0protein PHR1-LIKE 2-like isoform X1
RefseqXP_024358800.10.0protein PHR1-LIKE 2-like isoform X1
SwissprotQ94A574e-66PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A2K1IQI60.0A0A2K1IQI6_PHYPA; Uncharacterized protein
STRINGPP1S27_9V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.17e-61G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]