PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c21_2380V3.4.p

Common Name

PHYPADRAFT_173085

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 367aa MW: 42984.6 Da PI: 7.5806

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c21_2380V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30.8	7.6e-10	112	168	18	76
trihelix 18 eerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 e+ l +++ k+ +W+++s+ ++ gf+r+ k C++kw l+k y i ++ + + +s Pp3c21_2380V3.4.p 112 ENILVESRGKGMDWKSISECLKNSGFTRNEKHCTDKWYALRKHYIDIHDWITHH-P-ES 168 44455678999***************************************9986.3.33 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-4	99	153	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.189	99	152	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.44E-6	103	202	IPR009057	Homeodomain-like
Pfam	PF13837	3.2E-7	107	171	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MAVTDYTSIS ANVLDDFAWD LEDEVLRNPS LAWKNTDRYL FLEKEASQPG IDYFVAAGTP 60 SDSDVDGVKK MECWIGDDNQ PKTRKKRCRE YQAPTSHYRE RQRGKNWKEA EENILVESRG 120 KGMDWKSISE CLKNSGFTRN EKHCTDKWYA LRKHYIDIHD WITHHPESCY WSLSDSDRIR 180 TVPHSFCQKW YEIFDAAERR EGRKNRASLH QRRRQDNDEY LAIVPPSSLF GANLVGVPSN 240 STSRIDSVFA SRPQEFSQRH VGDSNFLGDA SHENERPETG DFLLNQDASA DWTLSRAEIR 300 MLVKEIRGLN YALQNKFARE EEERSRNLRI KEQKLQLKQD RFNYKRQRDD EARRAKPRQF 360 DGFNSV*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MAVTDYTSIS ANVLDDFAWD LEDEVLRNPS LAWKNTDRYL FLEKEASQPG IDYFVAAGTP  60
SDSDVDGVKK MECWIGDDNQ PKTRKKRCRE YQAPTSHYRE RQRGKNWKEA EENILVESRG  120
KGMDWKSISE CLKNSGFTRN EKHCTDKWYA LRKHYIDIHD WITHHPESCY WSLSDSDRIR  180
TVPHSFCQKW YEIFDAAERR EGRKNRASLH QRRRQDNDEY LAIVPPSSLF GANLVGVPSN  240
STSRIDSVFA SRPQEFSQRH VGDSNFLGDA SHENERPETG DFLLNQDASA DWTLSRAEIR  300
MLVKEIRGLN YALQNKFARE EEERSRNLRI KEQKLQLKQD RFNYKRQRDD EARRAKPRQF  360
DGFNSV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.3251	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9U0Y1	0.0	A9U0Y1_PHYPA; Predicted protein
STRING	PP1S408_31V6.3	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c21_2380V3.4.p
Entrez Gene	5947715

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]