PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c21_2380V3.1.p

Common Name

PHYPADRAFT_173085

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 297aa MW: 35200.1 Da PI: 9.3232

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c21_2380V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	31.4	4.9e-10	42	98	18	76
trihelix 18 eerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 e+ l +++ k+ +W+++s+ ++ gf+r+ k C++kw l+k y i ++ + + +s Pp3c21_2380V3.1.p 42 ENILVESRGKGMDWKSISECLKNSGFTRNEKHCTDKWYALRKHYIDIHDWITHH-P-ES 98 44455678999***************************************9986.3.33 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.189	29	82	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.1E-4	29	83	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.16E-7	33	132	IPR009057	Homeodomain-like
Pfam	PF13837	3.5E-7	37	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MECWIGDDNQ PKTRKKRCRE YQAPTSHYRE RQRGKNWKEA EENILVESRG KGMDWKSISE 60 CLKNSGFTRN EKHCTDKWYA LRKHYIDIHD WITHHPESCY WSLSDSDRIR TVPHSFCQKW 120 YEIFDAAERR EGRKNRASLH QRRRQDNDEY LAIVPPSSLF GANLVGVPSN STSRIDSVFA 180 SRPQEFSQRH VGDSNFLGDA SHENERPETG DFLLNQDASA DWTLSRAEIR MLVKEIRGLN 240 YALQNKFARE EEERSRNLRI KEQKLQLKQD RFNYKRQRDD EARRAKPRQF DGFNSV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.3251	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K1IQG5	0.0	A0A2K1IQG5_PHYPA; Uncharacterized protein
TrEMBL	A9U0Y1	0.0	A9U0Y1_PHYPA; Predicted protein
STRING	PP1S408_31V6.3	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c21_2380V3.1.p
Entrez Gene	5947715

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]