PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_18820V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HSF
Protein Properties Length: 427aa    MW: 47332.5 Da    PI: 7.5229
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_18820V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1132e-35261172102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+++++++sw e+g++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF++++F++g+++
  Pp3c21_18820V3.5.p  26 FLTKTYHLVNDPATNDIVSWGEDGTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANDYFRRGERH 107
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Pp3c21_18820V3.5.p 108 LLCEIHRRKA 117
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.1E-3819110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.2E-6122115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.74E-3423115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MSLAFDNSET GCMLFYDCHR SVPAPFLTKT YHLVNDPATN DIVSWGEDGT TFVVWRPPEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFRKVV PERWEFANDY FRRGERHLLC EIHRRKALQP  120
ASGTGSAQQS RSLSPSTSIE DQAWSPISSP MSSPLPISVP TQHPTLPVMS ISDENERLRK  180
DNNLLLCEVS RLRRLYEETV SIIHQQYKAT PTDFSALTSS LAGVEYSLIK SFGVGASGQS  240
LETAGSVTAL SGDAASQHRS LNPISRGDFE IPELSVHVRT TNHNFCKTIS PPTFPERAPN  300
AVFINPGNPK FPTGPKLTAS AESLNSSNKL VKLFGVPLHS QVAISEPATI RREPAAVAST  360
GLKRRQSDSP WDPVCEISDM DAPLCDQVFV RPPPRKCLRP ESEPRPSPVQ PPWLLICATR  420
DEGVYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A9e-23221157110Heat shock factor protein 1
5hdn_A9e-23221157110Heat shock factor protein 1
5hdn_B9e-23221157110Heat shock factor protein 1
5hdn_C9e-23221157110Heat shock factor protein 1
5hdn_D9e-23221157110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024359690.10.0heat stress transcription factor B-4-like isoform X1
SwissprotQ9C6351e-68HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2K1ISJ50.0A0A2K1ISJ5_PHYPA; Uncharacterized protein
STRINGPP1S85_27V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-66heat shock transcription factor B4