PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_18820V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HSF
Protein Properties Length: 414aa    MW: 46036 Da    PI: 7.7646
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_18820V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.11.9e-35261172102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+++++++sw e+g++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF++++F++g+++
  Pp3c21_18820V3.2.p  26 FLTKTYHLVNDPATNDIVSWGEDGTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANDYFRRGERH 107
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Pp3c21_18820V3.2.p 108 LLCEIHRRKA 117
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.9E-3819110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.2E-6122115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.69E-3423115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MSLAFDNSET GCMLFYDCHR SVPAPFLTKT YHLVNDPATN DIVSWGEDGT TFVVWRPPEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFRKVV PERWEFANDY FRRGERHLLC EIHRRKALQP  120
ASGTGSAQQS RSLSPSTSIE DQAWSPISSP MSSPLPISVP TQHPTLPVMS ISDENERLRK  180
DNNLLLCEVS RLRRLYEETV SIIHQQYKAT PTDFSALTSR VGASGQSLET AGSVTALSGD  240
AASQHRSLNP ISRGDFEIPE LSVHVRTTNH NFCKTISPPT FPERAPNAVF INPGNPKFPT  300
GPKLTASAES LNSSNKLVKL FGVPLHSQVA ISEPATIRRE PAAVASTGLK RRQSDSPWDP  360
VCEISDMDAP LCDQVFVRPP PRKCLRPESE PRPSPVQPPW LLICATRDEG VYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-222111525129Heat shock factor protein 1
5d5v_B2e-222111525129Heat shock factor protein 1
5d5v_D2e-222111525129Heat shock factor protein 1
5hdg_A1e-22221157110Heat shock factor protein 1
5hdk_A1e-22221157110Heat shock factor protein 2
5hdk_B1e-22221157110Heat shock factor protein 2
5hdk_C1e-22221157110Heat shock factor protein 2
5hdk_D1e-22221157110Heat shock factor protein 2
5hdn_A1e-22221157110Heat shock factor protein 1
5hdn_B1e-22221157110Heat shock factor protein 1
5hdn_C1e-22221157110Heat shock factor protein 1
5hdn_D1e-22221157110Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024359691.10.0heat stress transcription factor B-2b-like isoform X2
TrEMBLA0A2K1ISJ50.0A0A2K1ISJ5_PHYPA; Uncharacterized protein
STRINGPP1S85_27V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.17e-66heat shock transcription factor B4