PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c21_17650V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | GRAS | ||||||||
Protein Properties | Length: 892aa MW: 97679.5 Da PI: 6.6323 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 373.6 | 2.5e-114 | 530 | 889 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 lLl+cAeavssg++ +a+++L +l+e+++p+g+++qR++ayf+e++a+rl+ s+ ++ + lp ++ n + ++a ++f+e++P++k Pp3c21_17650V3.3.p 530 LALLLQCAEAVSSGNHDEANTILPQLREQVTPYGSSVQRVVAYFAEGMASRLVTSCLGINSPLPRNDLV--NNPSFTSAIQVFNEICPFVK 618 579*********************************************************999888886..577788999*********** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 fsh+ta qaI ea+eg + vH+iD+di++GlQW Llq La+Rp+gpp++ iTg+g s e+l +tg+rL +fA++lgv+f+f++ va Pp3c21_17650V3.3.p 619 FSHFTAIQAISEAFEGMNNVHVIDMDIMHGLQWHLLLQNLAKRPGGPPHVHITGLGT----SVETLDATGKRLIDFAATLGVSFQFTA-VA 704 *********************************************************....9**************************.7* PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 +++ +l++++L+v+ +alaV++++ h+l+d s++ + +L l+ +lsPk++++veq++ h +++Fl+rf+eal+yysalfdsl a+ Pp3c21_17650V3.3.p 705 EKFGKLDPSALKVEFSDALAVHWMH--HSLYDVSGCDSA----TLGLMHKLSPKIITIVEQDLRH-GGPFLNRFVEALHYYSALFDSLGAS 788 ************************9..999988888777....**********************.789********************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk.vk.sdgyrveeesgslvlgWk 363 + r+s +r++vE++ll+ ei+n++a g r +++ +Wr++l+eaGF+pv+ls +a+ qa lll++ ++ ++gy++ e+ g+l lgW+ Pp3c21_17650V3.3.p 789 YNRKSLKRHMVEQQLLSCEIKNILAIGGPGRSGT-TKFDHWRDKLSEAGFNPVALSAQAVHQAALLLSQgFYpGEGYTLLEDLGALKLGWE 878 ******************************6665.56***************************999653778****************** PP GRAS 364 drpLvsvSaWr 374 d L+++SaW+ Pp3c21_17650V3.3.p 879 DLCLFTASAWT 889 **********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 55.625 | 503 | 867 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.6E-112 | 530 | 889 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 892 aa Download sequence Send to blast |
MAIVCPNPSK RLRSVSTELL PGVITGTCTQ YADLPGYRSL VTAEDRDQLR MTDHYTLRNS 60 GQISSDAGGS CGVHWDVHRR ADSLDHGSDH LVDLDFTVGS NWPNSTLPPV APVSSWSNYT 120 FASNSFPTSS SGWEVPPLED NITVTFPSNV TFPNHLSSGI SAPNNFTNTL PQSLQLETCG 180 SASIRDGFFS SGLAQARSGN VQHLYQTQPL LINAEPGNSL GKIADAVPSH QHQHVPQFDM 240 PQHRTHSFSA HNASENVKDQ FAGLDEDAVS QWVDGMIRGM MEVMPGMPIE HLFANLSEAL 300 APGYVNAERV IRSRLHPLYA SARGRVQNTL PIDLARAGKR PRVEYNDGAK GQVYRENANS 360 SQNTSQTFKN AISGLHDRQE NVMQIQAAVS HPSPELREDQ QLPFSSSQKR TDDNLQLSLE 420 PADERSLRHL HTTRQPSLSK FGHQGVTSRD SPGPSHLKQY PQIQPHYHQK PKLGNTILDF 480 DVRSSVSQCS AQNARDCQGL PSLPLDVPQT SSQKRQSHEP STSQEGLQLL ALLLQCAEAV 540 SSGNHDEANT ILPQLREQVT PYGSSVQRVV AYFAEGMASR LVTSCLGINS PLPRNDLVNN 600 PSFTSAIQVF NEICPFVKFS HFTAIQAISE AFEGMNNVHV IDMDIMHGLQ WHLLLQNLAK 660 RPGGPPHVHI TGLGTSVETL DATGKRLIDF AATLGVSFQF TAVAEKFGKL DPSALKVEFS 720 DALAVHWMHH SLYDVSGCDS ATLGLMHKLS PKIITIVEQD LRHGGPFLNR FVEALHYYSA 780 LFDSLGASYN RKSLKRHMVE QQLLSCEIKN ILAIGGPGRS GTTKFDHWRD KLSEAGFNPV 840 ALSAQAVHQA ALLLSQGFYP GEGYTLLEDL GALKLGWEDL CLFTASAWTS T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-149 | 508 | 889 | 2 | 379 | Protein SCARECROW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024358664.1 | 0.0 | protein SCARECROW-like isoform X1 | ||||
TrEMBL | A0A2K1ISE4 | 0.0 | A0A2K1ISE4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S85_139V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 1e-147 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c21_17650V3.3.p |