PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_17650V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 733aa    MW: 81065.5 Da    PI: 6.8731
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_17650V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS374.31.6e-1143717302374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                           lLl+cAeavssg++ +a+++L +l+e+++p+g+++qR++ayf+e++a+rl+ s+ ++ + lp ++    n  + ++a ++f+e++P++k
  Pp3c21_17650V3.1.p 371 LALLLQCAEAVSSGNHDEANTILPQLREQVTPYGSSVQRVVAYFAEGMASRLVTSCLGINSPLPRNDLV--NNPSFTSAIQVFNEICPFVK 459
                         579*********************************************************999888886..577788999*********** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         fsh+ta qaI ea+eg + vH+iD+di++GlQW  Llq La+Rp+gpp++ iTg+g     s e+l +tg+rL +fA++lgv+f+f++ va
  Pp3c21_17650V3.1.p 460 FSHFTAIQAISEAFEGMNNVHVIDMDIMHGLQWHLLLQNLAKRPGGPPHVHITGLGT----SVETLDATGKRLIDFAATLGVSFQFTA-VA 545
                         *********************************************************....9**************************.7* PP

                GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         +++ +l++++L+v+  +alaV++++  h+l+d s++ +     +L l+ +lsPk++++veq++ h +++Fl+rf+eal+yysalfdsl a+
  Pp3c21_17650V3.1.p 546 EKFGKLDPSALKVEFSDALAVHWMH--HSLYDVSGCDSA----TLGLMHKLSPKIITIVEQDLRH-GGPFLNRFVEALHYYSALFDSLGAS 629
                         ************************9..999988888777....**********************.789********************** PP

                GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk.vk.sdgyrveeesgslvlgWk 363
                         + r+s +r++vE++ll+ ei+n++a  g  r    +++ +Wr++l+eaGF+pv+ls +a+ qa lll++ ++ ++gy++ e+ g+l lgW+
  Pp3c21_17650V3.1.p 630 YNRKSLKRHMVEQQLLSCEIKNILAIGGPGRSGT-TKFDHWRDKLSEAGFNPVALSAQAVHQAALLLSQgFYpGEGYTLLEDLGALKLGWE 719
                         ******************************6665.56***************************999653778****************** PP

                GRAS 364 drpLvsvSaWr 374
                         d  L+++SaW+
  Pp3c21_17650V3.1.p 720 DLCLFTASAWT 730
                         **********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.625344708IPR005202Transcription factor GRAS
PfamPF035145.4E-112371730IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MFIEEQIRWI MEVIIWWTWT SRASIRDGFF SSGLAQARSG NVQHLYQTQP LLINAEPGNS  60
LGKIADAVPS HQHQHVPQFD MPQHRTHSFS AHNASENVKD QFAGLDEDAV SQWVDGMIRG  120
MMEVMPGMPI EHLFANLSEA LAPGYVNAER VIRSRLHPLY ASARGRVQNT LPIDLARAGK  180
RPRVEYNDGA KGQVYRENAN SSQNTSQTFK NAISGLHDRQ ENVMQIQAAV SHPSPELRED  240
QQLPFSSSQK RTDDNLQLSL EPADERSLRH LHTTRQPSLS KFGHQGVTSR DSPGPSHLKQ  300
YPQIQPHYHQ KPKLGNTILD FDVRSSVSQC SAQNARDCQG LPSLPLDVPQ TSSQKRQSHE  360
PSTSQEGLQL LALLLQCAEA VSSGNHDEAN TILPQLREQV TPYGSSVQRV VAYFAEGMAS  420
RLVTSCLGIN SPLPRNDLVN NPSFTSAIQV FNEICPFVKF SHFTAIQAIS EAFEGMNNVH  480
VIDMDIMHGL QWHLLLQNLA KRPGGPPHVH ITGLGTSVET LDATGKRLID FAATLGVSFQ  540
FTAVAEKFGK LDPSALKVEF SDALAVHWMH HSLYDVSGCD SATLGLMHKL SPKIITIVEQ  600
DLRHGGPFLN RFVEALHYYS ALFDSLGASY NRKSLKRHMV EQQLLSCEIK NILAIGGPGR  660
SGTTKFDHWR DKLSEAGFNP VALSAQAVHQ AALLLSQGFY PGEGYTLLED LGALKLGWED  720
LCLFTASAWT ST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1513497302379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358666.10.0protein SCARECROW-like isoform X2
SwissprotQ2Z2E91e-147SCR_IPONI; Protein SCARECROW
TrEMBLA0A2K1ISE40.0A0A2K1ISE4_PHYPA; Uncharacterized protein
STRINGPP1S85_139V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-148GRAS family protein