PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_16440V3.2.p
Common NamePHYPADRAFT_226674, SHI
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family SRS
Protein Properties Length: 290aa    MW: 30504.2 Da    PI: 8.6611
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_16440V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702212.97.5e-66692302153
              DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstkl 91 
                         ++g+++Cq+CGnqakkdC+++RCRtCCksr+fdCathvkstWvpa+krrerq+++aaa++     + + +skr r+l  s  + a++s+++
  Pp3c21_16440V3.2.p  69 GHGSTACQECGNQAKKDCSFQRCRTCCKSRDFDCATHVKSTWVPASKRRERQAAEAAAAAA---GQPRPKSKRARTLaLSVPAGATTSMTT 156
                         57899**********************************************9988887433...344555566665536778899999999 PP

              DUF702  92 ssaeskkeletss............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                         +sa+s++ ++++s            lP+ev+++a+f+cvrv++v+dge+e+aYq++v+igGh+fkG+LydqGl+
  Pp3c21_16440V3.2.p 157 TSANSPRGSDINSghpsqpaqgrggLPPEVRAQALFKCVRVTGVEDGENECAYQATVKIGGHIFKGLLYDQGLD 230
                         99**********9***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.6E-5872230IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.2E-2675116IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016247.8E-27182229IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEPWGARTLR DDVVRVMDVQ PLNEQPPSRQ ASQHNPQTAQ PNVDAASQVH QLQLDAAKHK  60
LPQVSQVMGH GSTACQECGN QAKKDCSFQR CRTCCKSRDF DCATHVKSTW VPASKRRERQ  120
AAEAAAAAAG QPRPKSKRAR TLALSVPAGA TTSMTTTSAN SPRGSDINSG HPSQPAQGRG  180
GLPPEVRAQA LFKCVRVTGV EDGENECAYQ ATVKIGGHIF KGLLYDQGLD LAPPAVTSNP  240
SELHLGGGGA GGVRSNLPSS SPLLDPSGMY GPGNALLGGE DSRVPPWFT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9534190.0AY953419.1 Physcomitrella patens putative zinc finger protein (SHI) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024359764.10.0protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLQ58GF30.0Q58GF3_PHYPA; Predicted protein
STRINGPP1S373_11V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.25e-39Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]