PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c21_16440V3.1.p | ||||||||
Common Name | PHYPADRAFT_226674, SHI | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | SRS | ||||||||
Protein Properties | Length: 290aa MW: 30504.2 Da PI: 8.6611 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 212.9 | 7.5e-66 | 69 | 230 | 2 | 153 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstkl 91 ++g+++Cq+CGnqakkdC+++RCRtCCksr+fdCathvkstWvpa+krrerq+++aaa++ + + +skr r+l s + a++s+++ Pp3c21_16440V3.1.p 69 GHGSTACQECGNQAKKDCSFQRCRTCCKSRDFDCATHVKSTWVPASKRRERQAAEAAAAAA---GQPRPKSKRARTLaLSVPAGATTSMTT 156 57899**********************************************9988887433...344555566665536778899999999 PP DUF702 92 ssaeskkeletss............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +sa+s++ ++++s lP+ev+++a+f+cvrv++v+dge+e+aYq++v+igGh+fkG+LydqGl+ Pp3c21_16440V3.1.p 157 TSANSPRGSDINSghpsqpaqgrggLPPEVRAQALFKCVRVTGVEDGENECAYQATVKIGGHIFKGLLYDQGLD 230 99**********9***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.6E-58 | 72 | 230 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 9.2E-26 | 75 | 116 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 7.8E-27 | 182 | 229 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MEPWGARTLR DDVVRVMDVQ PLNEQPPSRQ ASQHNPQTAQ PNVDAASQVH QLQLDAAKHK 60 LPQVSQVMGH GSTACQECGN QAKKDCSFQR CRTCCKSRDF DCATHVKSTW VPASKRRERQ 120 AAEAAAAAAG QPRPKSKRAR TLALSVPAGA TTSMTTTSAN SPRGSDINSG HPSQPAQGRG 180 GLPPEVRAQA LFKCVRVTGV EDGENECAYQ ATVKIGGHIF KGLLYDQGLD LAPPAVTSNP 240 SELHLGGGGA GGVRSNLPSS SPLLDPSGMY GPGNALLGGE DSRVPPWFT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY953419 | 0.0 | AY953419.1 Physcomitrella patens putative zinc finger protein (SHI) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024359764.1 | 0.0 | protein LATERAL ROOT PRIMORDIUM 1-like | ||||
TrEMBL | Q58GF3 | 0.0 | Q58GF3_PHYPA; Predicted protein | ||||
STRING | PP1S373_11V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1313 | 15 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 5e-39 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Pp3c21_16440V3.1.p |
Entrez Gene | 5946877 |
Publications ? help Back to Top | |||
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