PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_16050V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LBD
Protein Properties Length: 357aa    MW: 38522 Da    PI: 8.3546
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_16050V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.82.5e-312103197
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv Gavg+++++++q
  Pp3c21_16050V3.1.p   2 SCNGCRVLRKGCSESCILRPCLqwidsADAQGHATVFVAKFFGRAGLMSFITAVPENQRPALFQSLLYEACGRTVNPVFGAVGLLWAGNWQ 92 
                         6*********************9998666778*********************************************************** PP

              DUF260  87 leqlkaelall 97 
                         ++q+++e++l 
  Pp3c21_16050V3.1.p  93 VCQAAVETVLK 103
                         *****998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.581107IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-262101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIDSAD AQGHATVFVA KFFGRAGLMS FITAVPENQR  60
PALFQSLLYE ACGRTVNPVF GAVGLLWAGN WQVCQAAVET VLKGGVLKAP SSCSLGFSAL  120
PQGLLHPSNP GKDTSVTSKG RDSLLPSLIT SAKGNIPDLC KVRVGAGPIL EQYQRTNGYE  180
SKDHDAAAVK SSWDRKWDIN VQQQEWPKHQ QLDTAKGNVK SHMVAWPEAL GNIVHKVGEK  240
RDRDFSGAQV LVPAPRRLKP CLAIEYGMSM KECAVYDDQE TVVGSTEHLD LGLTLKVKDG  300
KGGQITGFKT VYSPSDSVNS EGSVTSLDTT PRHVHHTSFS SPMSGGDMDR KLLLLL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.4301e-65gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024359720.10.0uncharacterized protein LOC112274443 isoform X1
TrEMBLA0A2K1IS710.0A0A2K1IS71_PHYPA; Uncharacterized protein
STRINGPP1S167_34V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-67LOB domain-containing protein 37