PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_15110V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GATA
Protein Properties Length: 347aa    MW: 37307.5 Da    PI: 8.3498
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_15110V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.79.2e-20190224135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cgt+kTplWR+gp g+k+LCnaCG++++k g+
  Pp3c21_15110V3.1.p 190 CAHCGTSKTPLWRNGPGGPKSLCNACGIRFKKAGR 224
                         ********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.4E-18184235IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.769184223IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-13185226No hitNo description
Gene3DG3DSA:3.30.50.107.3E-17188224IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.28E-15189224No hitNo description
PROSITE patternPS003440190215IPR000679Zinc finger, GATA-type
PfamPF003201.2E-17190224IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MVGVQGAGSP RARGPCGSDS PAETEDPSYC NLSLAVDCTL SLGSIASRTD IPSLLSRAGS  60
PEQDLAWSLS VRSEVVERDR SDQDMSWGGS SNHSDHDVSP EYYPQVSERG GRLTSGGRKS  120
FKAWPRSSAI SYKNDVNTSK ALYSMVEDQT CGNRSIRQPW LPDYLASSAA VEAKPASRLE  180
QDGDGCARVC AHCGTSKTPL WRNGPGGPKS LCNACGIRFK KAGRRSAANG SSESQTPHPG  240
VTKVAKRKSA NDDQHYWVFP PEAKSRKRSR GSLLRTSESL LSESCMTWQS PLFASSPKST  300
LHRDFRASPV VRIQDKELNM HVGSFSSDEE EGAVLLMALS CGMVNA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.156951e-117gametophore| protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024359934.10.0putative GATA transcription factor 22
TrEMBLA0A2K1IS190.0A0A2K1IS19_PHYPA; Uncharacterized protein
STRINGPP1S167_128V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.13e-16GATA transcription factor 19