PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_14114V3.7.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 336aa    MW: 36794 Da    PI: 4.742
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_14114V3.7.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH253.4e-08267312655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR  i +++ +L++l+P       k  + a++L ++++Y+ sLq
  Pp3c21_14114V3.7.p 267 SIAERVRRTGISERMKKLQDLVPGM----EKTTNTATMLDETMDYVMSLQ 312
                         689*********************7....366****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.855261311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-14264327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.84E-9265315No hitNo description
Gene3DG3DSA:4.10.280.103.1E-14266328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-5267312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9267317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MLNYSPGIGH ISATPAAPGV GLQRYHSAPG AFLQAAADDA FSQIPLPLEN SDVDSAFGDC  60
GLPPITEQTD MEQMDSGNSM VEFEQFLPLD SDFSERAAMS ALGVAKSENV DTFASFFPPA  120
KETRSVREKR VSIAEKIIPN QEIITISEDH HSEDSISGTS EVNSLRNGFN VAMYSQDDFF  180
RTDTMTSMPT SQGGKRQRGF AGEYTTSNDS ELNFKSFRLG INQSTGFIRH ASFPTSGEGV  240
NMDSNPDDRY VQMRLRAKRG CATHPRSIAE RVRRTGISER MKKLQDLVPG MEKTTNTATM  300
LDETMDYVMS LQNKVTELQE SIVQLKPGAT LINSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358966.10.0transcription factor bHLH130-like isoform X1
RefseqXP_024358967.10.0transcription factor bHLH130-like isoform X1
RefseqXP_024358968.10.0transcription factor bHLH130-like isoform X1
RefseqXP_024358969.10.0transcription factor bHLH130-like isoform X1
RefseqXP_024358970.10.0transcription factor bHLH130-like isoform X1
TrEMBLA0A2K1IRW40.0A0A2K1IRW4_PHYPA; Uncharacterized protein
STRINGPP1S132_152V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.13e-27bHLH family protein