PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_14110V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 266aa    MW: 29629.1 Da    PI: 5.2265
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_14110V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.4e-08197242655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR  i +++ +L++l+P       k  + a++L ++++Y+ sLq
  Pp3c21_14110V3.1.p 197 SIAERVRRTGISERMKKLQDLVPGM----EKTTNTATMLDETMDYVMSLQ 242
                         689*********************7....366****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.855191241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-14194257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.29E-8195245No hitNo description
Gene3DG3DSA:4.10.280.102.0E-14196258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-5197242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MEQMDSGNSM VEFEQFLPLD SDFSERAAMS ALGVAKSENV DTFASFFPPA KETRSVREKR  60
VSIAEKIIPN QEIITISEDH HSEDSISGTS EVNSLRNGFN VAMYSQDDFF RTDTMTSMPT  120
SQGGKRQRGF AGEYTTSNDS ELNFKSFRLG INQSTGFIRH ASFPTSGEGV NMDSNPDDRY  180
VQMRLRAKRG CATHPRSIAE RVRRTGISER MKKLQDLVPG MEKTTNTATM LDETMDYVMS  240
LQNKVTELQE SIVQLKPGAT LINSS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358966.10.0transcription factor bHLH130-like isoform X1
RefseqXP_024358967.10.0transcription factor bHLH130-like isoform X1
RefseqXP_024358968.10.0transcription factor bHLH130-like isoform X1
RefseqXP_024358969.10.0transcription factor bHLH130-like isoform X1
RefseqXP_024358970.10.0transcription factor bHLH130-like isoform X1
TrEMBLA0A2K1IRW40.0A0A2K1IRW4_PHYPA; Uncharacterized protein
STRINGPP1S132_152V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.16e-28bHLH family protein