PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_13490V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 1064aa    MW: 119972 Da    PI: 5.0417
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_13490V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix29.61.8e-09120203280
            trihelix   2 WtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                         W   e l+L+ a +e  e++++       +++ +W ++ +++  + + rs+  C ekw  l+ ++k+ik+ e++  +++ s + 
  Pp3c21_13490V3.1.p 120 WDVLEMLVLVSAMKEYAETVGDHPledhiSEQEKWHSIESYCLGQLVLRSALDCSEKWACLSVEFKRIKDFESNMVQDQISYWE 203
                         7777999999999999999997644555699******************************************98777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508089.979340416IPR003656Zinc finger, BED-type
SuperFamilySSF530981.97E-375361018IPR012337Ribonuclease H-like domain
PfamPF056991.1E-109411014IPR008906HAT, C-terminal dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1064 aa     Download sequence    Send to blast
MENGVDAEAI TNDHLSGGLV DVIGTTEELE MDVRSDKMHE VQELGNGRHE QFERDDDHVE  60
NSVHDAMMLE ETRGGIGAEH QESGVMEGEE DHMGFDEDTR IDGIETSKGQ VDKHYKEGPW  120
DVLEMLVLVS AMKEYAETVG DHPLEDHISE QEKWHSIESY CLGQLVLRSA LDCSEKWACL  180
SVEFKRIKDF ESNMVQDQIS YWEMTYDERR NFHLPGDFSQ EVYNALWHWD DRDRIGEIGA  240
PVILEDEINI IKERSSFGSI VRTRKRSDRG EYQVSRKVSR GEGSIEPSFL GSQLLMLDNQ  300
QSSLALVETP QEILPSEDDV VWNAQFSQLR ANQNFWAPHG RASATWAFYV VNDNSEPDSA  360
RPQQMRCAIC HPAQQEHRPN SATRVRKGVV TYNKQHGTTS MKKHVAQEHG DIFTKYKATR  420
MSNATTRAEF QHSRRMKNDP LPSIISDILY NQNSNKKFDP AQERLLEDLV LYVAKGCHPM  480
SVVENVWLKK LVMNRQFGRV SFPSSRQLTD EVIPRVVSQI IEKNILPSLR GCVSATVTFD  540
LWMSRRGVNS IATVVHFINE SWETCHVTIG VLEASVIAGE ELVMEVKDLL SSFNLMDKII  600
AFVVKDDDSR LTSLAEALSK KVVCSPLQLS EPYTGTCFGN VLSKACENTT TDEKACDGLR  660
AVSIEAAISS LRRSISSTSR SAKRRLEWMK ACADVGLRPR KLRAPVKGRF ASKVILCQEA  720
LDYQPVLQLC SASQSDGMFF DVPSVETWAI AKAVTVALNP VLQQCVMNRS KGYWLLSDAI  780
AAALSLYLQL HKETINRSLP DPKLDPHFES ELEVLQVRLV QEVMSTLSLS LNFTLDYSAK  840
HSHNMLALML DPRYKGLSLL KDYVGRDMAL AVVAEVDNRA LLPCLVTVFK QLNPSSVENV  900
SALSPTSKDF FDENSLFGSS ASHDEAIVGH LKAELSLFRR LRIDSKECEN PLAWWKDREV  960
QFPNVGFLAR QILGIVGSQV ETERIFSIVG VITEIHRRHL GTDNLDKLVL IRENWKDDSR  1020
AGSEYPAAGH KMVDSVLENY LLGEENILDE HEDLLMEAVL FDD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.117090.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024359895.10.0uncharacterized protein LOC112274515 isoform X1
RefseqXP_024359896.10.0uncharacterized protein LOC112274515 isoform X2
TrEMBLA0A2K1IRU10.0A0A2K1IRU1_PHYPA; Uncharacterized protein
STRINGPP1S299_56V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.16e-14Trihelix family protein