PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c21_13480V3.1.p | ||||||||
Common Name | PHYPADRAFT_231478 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | E2F/DP | ||||||||
Protein Properties | Length: 674aa MW: 73104.1 Da PI: 9.1447 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 72.6 | 4.4e-23 | 113 | 178 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+ ++e + ++l+e+a++L v +rRRiYDi+NVLe+++++ +k+kn+++w+g Pp3c21_13480V3.1.p 113 RKDKSLGLLCENFLNLYGTEEGECISLDEAASRL---GV--ERRRIYDIVNVLESIEVLIRKAKNRYTWHG 178 79****************9999************...**..******************999*******98 PP | |||||||
2 | E2F_TDP | 71.5 | 9.7e-23 | 258 | 338 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL+ll+qkf++l+ s++++v+l+++a+ L+ + + k+k+RR+YDi+N+L++l+liek ++k+++rw g Pp3c21_13480V3.1.p 258 RREKSLGLLSQKFVQLFLVSQSQVVSLEDAARLLLGDckdasKLKTKVRRLYDIANILSSLQLIEKthmaeNRKPAFRWLG 338 689***************************************99***********************999999******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.3E-27 | 108 | 179 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.78E-15 | 112 | 177 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.9E-29 | 113 | 178 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 3.5E-20 | 114 | 178 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 5.7E-24 | 254 | 339 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 5.3E-33 | 258 | 338 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.37E-12 | 260 | 339 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 1.7E-19 | 260 | 338 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 674 aa Download sequence Send to blast |
MNSPLTKQPR QSPIQSRTFA NRDRMPPLTP NTRSDVNTAR GRVSLNSEPS ITDSEKENRV 60 HRPGGSIKRS TNSSSLIKYE VLNESTRSAS PSIGTVNHHQ SDADTRAHSS YNRKDKSLGL 120 LCENFLNLYG TEEGECISLD EAASRLGVER RRIYDIVNVL ESIEVLIRKA KNRYTWHGST 180 RLPQALQTMK EAALRVYGLG EFANTSADES RPTIVASNCA SSDDEDEERK TLPSQESEAC 240 ASVQSQQSSA PKAKADCRRE KSLGLLSQKF VQLFLVSQSQ VVSLEDAARL LLGDCKDASK 300 LKTKVRRLYD IANILSSLQL IEKTHMAENR KPAFRWLGTK DDLVGPATRM RISGNYVQSP 360 TVNTIPACSS FSFDRTKRGL KRGGTDAPRV EPNSAKRTAL KPLQPRDPNV MTPYSRDIIN 420 KPVPLHPRAS QADSSVSDLK ILSVAPSPHN AADSPTAPAT TAFSSPIRTT VGWREWNDGV 480 QIHATPTITP WSAQCCDHAG SSNAACPSSN STLTCSQGGC TPVISQAPGM GSPAVMAGGG 540 VRNCRTCLSR VSYDNLYPFR PPGSLFNPFL PSPPFPMHPQ LAAAGFSLAP PGLAPEQSLG 600 LDSTRAQDCS VHRTDNGVAA AAVLQYHNET LGHMFAQYVE AWKSWYLQAA SVANPSSFQT 660 PPPVRPGTPQ SPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 4e-46 | 113 | 330 | 4 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024358850.1 | 0.0 | transcription factor E2F7-like isoform X1 | ||||
TrEMBL | A0A2K1IRU4 | 0.0 | A0A2K1IRU4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S132_65V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2474 | 16 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.1 | 5e-56 | DP-E2F-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c21_13480V3.1.p |
Entrez Gene | 5934241 |
Publications ? help Back to Top | |||
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