PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_13130V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 268aa    MW: 29343.2 Da    PI: 5.7616
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_13130V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-182473255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ykGVr+++ +g+Wv+eIr p++   + r++lg+f+tae+Aa a++ a++ l+g
  Pp3c21_13130V3.3.p 24 LYKGVRRRP-WGSWVSEIRKPKS---KSRIWLGSFDTAEMAATAYDTAALVLRG 73
                        69*******.**********843...4***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-122373IPR001471AP2/ERF domain
CDDcd000182.34E-312383No hitNo description
PROSITE profilePS5103223.1562481IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-212482IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-312482IPR001471AP2/ERF domain
SMARTSM003801.2E-352487IPR001471AP2/ERF domain
PRINTSPR003679.7E-102536IPR001471AP2/ERF domain
PRINTSPR003679.7E-104763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MIGGSQAQQE TKLGTELGDA NHPLYKGVRR RPWGSWVSEI RKPKSKSRIW LGSFDTAEMA  60
ATAYDTAALV LRGADAQLNF PNLASSLPRP QDLSDKSIQA AAIEAAQCIS RQMKPQSRDR  120
SRCHTFATNS RTHSSHQRDQ GIDSSLDHQH LPGNGTQYNL ATFTSGRNHH LPQHMSRSCG  180
HEDVIPLTSA PASSDSDLCW LPNSSASCTD ISDVEMEGED RASPEYPSSF MEVDQMPNSM  240
ADSLQSSAND SDEGTSAYSW EPRLWSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1820871081Ethylene-responsive transcription factor ERF096
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.151630.0gametophore
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358931.10.0ethylene-responsive transcription factor TINY-like isoform X1
TrEMBLA0A2K1IRR90.0A0A2K1IRR9_PHYPA; Uncharacterized protein
STRINGPP1S132_34V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-23ERF family protein