PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c21_13130V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 267aa MW: 29272.1 Da PI: 5.7616 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.2 | 7.2e-17 | 24 | 67 | 2 | 49 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 ykGVr+++ +g+Wv+eIr p++ + r++lg+f+tae+Aa a++ a Pp3c21_13130V3.2.p 24 LYKGVRRRP-WGSWVSEIRKPKS---KSRIWLGSFDTAEMAATAYDTA 67 69*******.**********843...4*******************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.36E-29 | 23 | 82 | No hit | No description |
Pfam | PF00847 | 1.5E-10 | 23 | 67 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.4E-32 | 24 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.809 | 24 | 80 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-28 | 24 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.64E-18 | 24 | 81 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.7E-10 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.7E-10 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MIGGSQAQQE TKLGTELGDA NHPLYKGVRR RPWGSWVSEI RKPKSKSRIW LGSFDTAEMA 60 ATAYDTALVL RGADAQLNFP NLASSLPRPQ DLSDKSIQAA AIEAAQCISR QMKPQSRDRS 120 RCHTFATNSR THSSHQRDQG IDSSLDHQHL PGNGTQYNLA TFTSGRNHHL PQHMSRSCGH 180 EDVIPLTSAP ASSDSDLCWL PNSSASCTDI SDVEMEGEDR ASPEYPSSFM EVDQMPNSMA 240 DSLQSSANDS DEGTSAYSWE PRLWSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-16 | 20 | 86 | 10 | 81 | Ethylene-responsive transcription factor ERF096 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.15163 | 0.0 | gametophore |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024358932.1 | 0.0 | ethylene-responsive transcription factor TINY-like isoform X2 | ||||
TrEMBL | A0A2K1IRR9 | 0.0 | A0A2K1IRR9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S132_34V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 2e-29 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c21_13130V3.2.p |