PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c21_13130V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 268aa MW: 29343.2 Da PI: 5.7616 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.2e-18 | 24 | 73 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr+++ +g+Wv+eIr p++ + r++lg+f+tae+Aa a++ a++ l+g Pp3c21_13130V3.1.p 24 LYKGVRRRP-WGSWVSEIRKPKS---KSRIWLGSFDTAEMAATAYDTAALVLRG 73 69*******.**********843...4***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.3E-12 | 23 | 73 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.34E-31 | 23 | 83 | No hit | No description |
PROSITE profile | PS51032 | 23.156 | 24 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.47E-21 | 24 | 82 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-31 | 24 | 82 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-35 | 24 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.7E-10 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.7E-10 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MIGGSQAQQE TKLGTELGDA NHPLYKGVRR RPWGSWVSEI RKPKSKSRIW LGSFDTAEMA 60 ATAYDTAALV LRGADAQLNF PNLASSLPRP QDLSDKSIQA AAIEAAQCIS RQMKPQSRDR 120 SRCHTFATNS RTHSSHQRDQ GIDSSLDHQH LPGNGTQYNL ATFTSGRNHH LPQHMSRSCG 180 HEDVIPLTSA PASSDSDLCW LPNSSASCTD ISDVEMEGED RASPEYPSSF MEVDQMPNSM 240 ADSLQSSAND SDEGTSAYSW EPRLWSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-18 | 20 | 87 | 10 | 81 | Ethylene-responsive transcription factor ERF096 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.15163 | 0.0 | gametophore |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024358931.1 | 0.0 | ethylene-responsive transcription factor TINY-like isoform X1 | ||||
TrEMBL | A0A2K1IRR9 | 0.0 | A0A2K1IRR9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S132_34V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 4e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c21_13130V3.1.p |