PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_11880V3.4.p
Common NamePHYPADRAFT_172818
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 312aa    MW: 34152.9 Da    PI: 5.4704
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_11880V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.43e-1277118346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rW +e+ +l+++a +q+G++ +++I + ++ gRt+kq+ks++ +
  Pp3c21_11880V3.4.p  77 RWKQEDTDLFYKALQQFGTD-FELIQNLFP-GRTRKQVKSKFKN 118
                         9*******************.*********.**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.95E-1167120IPR009057Homeodomain-like
PfamPF159636.4E-3068153No hitNo description
PROSITE profilePS512939.71573124IPR017884SANT domain
SMARTSM007173.3E-974122IPR001005SANT/Myb domain
CDDcd001671.54E-877118No hitNo description
Gene3DG3DSA:1.10.10.602.3E-777118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MTTPAAQNTS APSNSSAPSV LTPQVQIVNG RIVINQQSLM VAAQASTRED IDTYRRVEED  60
RPKLNSNSYS NRTHVERWKQ EDTDLFYKAL QQFGTDFELI QNLFPGRTRK QVKSKFKNEE  120
RLNPVRLADA LGHKIQDQSH HYRAILEMIK SEKPVGDPDE GLLESLLRPV VTNETSSGQP  180
VATQVVASEE KMDKEGSVEV PANTVALEKA KPDDPIVPVS DPILFNSAVL PQSDVGTITS  240
KNDSPTSEDP ATSVPSDQSK NNASRNRLGS YGNPLSSYVK EPISGNSLGN YENLSKNPLG  300
SYGKNPLGMY N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cnb_S1e-1329164369504Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnc_S1e-1329164369504Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnd_S1e-1329164369504Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnf_S1e-1329164369504Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6eu0_V2e-1329164369504Transcription factor TFIIIB component B''
6f40_W2e-1329164369504Transcription factor TFIIIB component B''
6f41_W2e-1329164369504Transcription factor TFIIIB component B''
6f42_W2e-1329164369504Transcription factor TFIIIB component B''
6f44_W2e-1329164369504Transcription factor TFIIIB component B''
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.147190.0gametophore| protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024359822.10.0transcription factor TFIIIB component B''-like
TrEMBLA0A2K1IRN70.0A0A2K1IRN7_PHYPA; Uncharacterized protein
STRINGPP1S382_35V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.26e-21MYB_related family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]