PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_11270V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 618aa    MW: 68023.5 Da    PI: 6.3885
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_11270V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87e-31324382159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +dDgy+WrKYGqK vk+s++pr+YYrCt+ +Cpv+k+ver+ +dp v+++tYeg+H+h+
  Pp3c21_11270V3.1.p 324 MDDGYKWRKYGQKAVKKSPHPRNYYRCTTLNCPVRKRVERCFDDPGVMVTTYEGTHTHQ 382
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-32309384IPR003657WRKY domain
SuperFamilySSF1182901.2E-28317384IPR003657WRKY domain
PROSITE profilePS5081130.274319384IPR003657WRKY domain
SMARTSM007749.3E-37324383IPR003657WRKY domain
PfamPF031061.4E-24325382IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MEGTFRSRQE DSSADLSEIH NSRRILRSST DSEAAPSSQS SHIELGVDST SSGRFPEYSP  60
GLNAWSFCLP PPELRGLAAS ATSNNSEPSW RTGSPQHLSP IQREILADFP WLSEELEQRS  120
LNAGTGTPSS SEASYPRFCS RSNEYGLTGG SQDHESNVSS SVSPLETSVA TPIDHVAWAQ  180
SMLELQATFE DSLHDESHFQ EKKPKSSGSQ FSDHVNVEHQ SRSVTPAHSE TPFNSESLSS  240
SLSDGEAELK KGEGKDDSSI CEDAAGTSAL SSKRKRPDRK DGKDDKSEDQ ETKKPTNRPR  300
KKLGVKRVRE PRYAIKTRTD TDVMDDGYKW RKYGQKAVKK SPHPRNYYRC TTLNCPVRKR  360
VERCFDDPGV MVTTYEGTHT HQSPTFLRSP VGYPGGLQEL LSTLSHHYSQ AGNPALPRFP  420
NQSHLDLSSS DRLYSSVTSP LWGLSQQDDG SIQDNLNLLR AQELLRLQRE PGWASSIKSE  480
PFQFGAQDHI HNMKRPQEVR SIKLPSSSFS NGSSLSNQSN ETGARLTQRQ FESLGSAVPE  540
HLGSLPKDYS SFNSDVGPSS EQQPFPPISV KSFLDRPLVS ELFSAAPSQE STGTTDGGLL  600
EDMLRPTNPT NLGMSRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-24314384777Probable WRKY transcription factor 4
2lex_A5e-24314384777Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358933.10.0uncharacterized protein LOC112274033 isoform X1
TrEMBLA0A2K1IRN00.0A0A2K1IRN0_PHYPA; Uncharacterized protein
STRINGPP1S235_126V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.27e-34WRKY DNA-binding protein 57