PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c20_8950V3.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB | ||||||||
Protein Properties | Length: 462aa MW: 49804.4 Da PI: 7.6383 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 3e-17 | 19 | 64 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v ++G+++W++I + ++ gR++k+c++rw + Pp3c20_8950V3.4.p 19 KGPWSPEEDSALQQLVDKYGPRNWSLIGKGIP-GRSGKSCRLRWCNQ 64 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 57.3 | 3.6e-18 | 73 | 115 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++Tt Ede ++ a+ q+G++ W+tIar ++ gRt++ +k++w++ Pp3c20_8950V3.4.p 73 PFTTVEDETIIAAHSQHGNK-WATIARLLP-GRTDNAIKNHWNST 115 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.906 | 14 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.35E-30 | 16 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-16 | 18 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-17 | 19 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 20 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.39E-14 | 21 | 63 | No hit | No description |
SMART | SM00717 | 1.8E-14 | 70 | 118 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.232 | 70 | 120 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.8E-14 | 73 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 73 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.70E-11 | 73 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MAMGTAQRCH VSEEVDRIKG PWSPEEDSAL QQLVDKYGPR NWSLIGKGIP GRSGKSCRLR 60 WCNQLSPQVQ HRPFTTVEDE TIIAAHSQHG NKWATIARLL PGRTDNAIKN HWNSTLRRRH 120 MAERPSRTEC DDHHNCHAGH LGTCDDDDSG IADGRKRNSK EISSDGSVQD KGGWEVDSHK 180 VKRLHIDGDS PRELPVGFVE VPPVFRPVAR SFASYCPNAA YAPPLSERSD TSEVNDPPTS 240 LSLSLPGSSP TRKEQSSSED SALRRQLSTS SHAPCLPNQP DSPELPAHGR WESGTAVDQS 300 LKDKFSVSSF PAHTSPMATQ IPGLSNPSSS PLTPPHSGYG LPDNSQTAEL MSAAVRTVVA 360 QAFDPVLQAQ GAGGAKSWKA PPAPLSYGLD AAVYAGLVAL MREMVRSEVQ KYMKAVQSPT 420 CAPVYPSYGS DHLSVGSHSK FSNQSDFLGS IATNAPRKAG S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-38 | 18 | 119 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-38 | 18 | 119 | 3 | 104 | C-Myb DNA-Binding Domain |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00400 | DAP | Transfer from AT3G50060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024357660.1 | 0.0 | transcription factor MYB1-like | ||||
TrEMBL | A0A2K1IUM8 | 0.0 | A0A2K1IUM8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S10_267V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 9e-58 | myb domain protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c20_8950V3.4.p |