PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c20_6860V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 295aa MW: 33740.9 Da PI: 7.6976

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c20_6860V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.0007	162	186	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C+ C+k ++ ++++H+++ H Pp3c20_6860V3.1.p 162 FYCELCNKQYKLATEFETHLSSydH 186 79*****************987555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00443	5.9E-19	65	110	IPR000467	G-patch domain
PROSITE profile	PS50174	17.092	67	112	IPR000467	G-patch domain
Pfam	PF01585	4.0E-16	68	108	IPR000467	G-patch domain
SuperFamily	SSF57667	6.22E-6	159	198	No hit	No description
PROSITE profile	PS50157	8.995	162	191	IPR007087	Zinc finger, C2H2
Pfam	PF12171	9.9E-6	162	189	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	164	186	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MDPSRRQGGG YAVFAQEQRQ REREQAYEDS LADDLGEEFR LPITHRPVEN LNTEFLEQAS 60 VHTSLSSSNI GFRLLQKMGW RGKGLGKNEQ GIVEPIKAGV RDAKLGVGKQ EQDDFYTAEE 120 NIHRKKLDVE VEETEELAKK REVVAERETK IQNEVKEIHR VFYCELCNKQ YKLATEFETH 180 LSSYDHNHKK RFKEMRESQG GRNRDERQKR EQAREEKELA RFAQLAEAQR LQMEAKAAGS 240 SGTMEIVQEQ RPTLKFGFGS KPIASKMSMG LAIKKTKVAS KVASVFKNDS DEET*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.6780	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024357553.1	0.0	G patch domain-containing protein 8-like isoform X1
Refseq	XP_024357555.1	0.0	G patch domain-containing protein 8-like isoform X1
Refseq	XP_024357556.1	0.0	G patch domain-containing protein 8-like isoform X1
TrEMBL	A0A2K1IUC0	0.0	A0A2K1IUC0_PHYPA; Uncharacterized protein
STRING	PP1S9_212V6.3	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6370	7	8

Link Out ? help Back to Top
Phytozome	Pp3c20_6860V3.1.p