PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c20_6540V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 213aa MW: 23308.2 Da PI: 9.4926 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.5 | 8.3e-42 | 35 | 134 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r da+sslvyeA+ar+rdPvyG++g i++lqqq + l+a Pp3c20_6540V3.2.p 35 PCAACKLLRRRCAQECPFSPYFSPQEPQKFACVHKIFGASNVSKMLMEVPENQRADAASSLVYEANARIRDPVYGCMGAISALQQQAQALQA 126 7******************************************************************************************* PP DUF260 93 elallkee 100 el++++ e Pp3c20_6540V3.2.p 127 ELNAVRME 134 ***99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.331 | 34 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-41 | 35 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MLVHSRAQHG ERKVKSPTTE SRKKMLNSQG QGSTPCAACK LLRRRCAQEC PFSPYFSPQE 60 PQKFACVHKI FGASNVSKML MEVPENQRAD AASSLVYEAN ARIRDPVYGC MGAISALQQQ 120 AQALQAELNA VRMEINRYRQ HENSPTNGTL TTTASATALV SGYQELVQDR GRASDTRSSK 180 PSTTDVHTTV HSPSSTVATS ESKDRTYWSP IT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-46 | 30 | 138 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-46 | 30 | 138 | 7 | 114 | LOB family transfactor Ramosa2.1 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024358125.1 | 1e-159 | LOB domain-containing protein 15-like isoform X1 | ||||
Swissprot | Q9AT61 | 5e-58 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A2K1IJC4 | 1e-103 | A0A2K1IJC4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S9_186V6.1 | 1e-158 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-55 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c20_6540V3.2.p |
Publications ? help Back to Top | |||
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