PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c20_590V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 192aa MW: 21699.7 Da PI: 6.5072 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.1 | 4.1e-05 | 26 | 68 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 E R ++i++++ L++l+P + +K K ++L + ++Y++sLq Pp3c20_590V3.3.p 26 EWVRCEKIRKRMKYLQDLVPGC-----RKvTGKTDMLDEIINYVQSLQ 68 667999***************9.....67799***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.23E-10 | 15 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.004 | 17 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.2E-10 | 22 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MEYSKQDFIR VRARRGQATD SLSVAEWVRC EKIRKRMKYL QDLVPGCRKV TGKTDMLDEI 60 INYVQSLQCQ AESLSMKLGA VHPAPLDHLT LESLLSIEEV LQSQWSNILC TSDSTSSPEF 120 GLQQLPQQRG TPIGNFAEMQ TMVNSFDNNL VSQFTNWSDS LPNVMHMAQL QQQSSRLGSY 180 QLPVGHMKVE F* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024395738.1 | 1e-104 | transcription factor bHLH49-like | ||||
Swissprot | Q9C670 | 1e-33 | BH076_ARATH; Transcription factor bHLH76 | ||||
TrEMBL | A0A2K1JJ33 | 1e-103 | A0A2K1JJ33_PHYPA; Uncharacterized protein | ||||
STRING | PP1S69_95V6.1 | 1e-104 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26260.3 | 2e-36 | cryptochrome-interacting basic-helix-loop-helix 5 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c20_590V3.3.p |
Publications ? help Back to Top | |||
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