PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c20_3770V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 536aa    MW: 57268.4 Da    PI: 5.8618
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c20_3770V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.36.1e-21223273256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++aa+ kl+ge
  Pp3c20_3770V3.1.p 223 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDAAAYKLRGE 273
                        59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.44E-20222280No hitNo description
Gene3DG3DSA:3.30.730.107.2E-32223281IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-23223281IPR016177DNA-binding domain
PROSITE profilePS5103223.578223280IPR001471AP2/ERF domain
SMARTSM003801.2E-37223286IPR001471AP2/ERF domain
PRINTSPR003676.9E-11224235IPR001471AP2/ERF domain
PfamPF008478.5E-15224273IPR001471AP2/ERF domain
PRINTSPR003676.9E-11246262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MAAVAHYDMS DMLLGQEVSY SGSYYGGNGV HDGGGVSTFN PDISILEGCR QSAILPSNSS  60
SNFCAPSQCF NRGELSPHEG KLSVTSLGMP FTPGSAALLK DQIPIWSEYK SSILVSPQFP  120
PTYGSERVGM YQQPGVQDLS NGVALAGDAS HLQQLHQLSG NYPQVSQLPP QQLYQVQGFS  180
PPLPEIDLQN LPRTWSPLAD LGPRAHVMKK TAEKRIGVPR TKLYRGVRQR HWGKWVAEIR  240
LPRNRTRLWL GTFDTAEEAA LAYDAAAYKL RGEYARLNFP RQQDDKGVAG VAQTTVGVPS  300
ALFNRGFSST LGAKLKEIAY QKALQANVAG GDSSTCHPPT QPEDKTGLRE PTQQAAFSGQ  360
AENLSVPSVS GLEHFSFRES GSSTSTSPCQ SPPEASSGSE SRYVSSPGSD ATGESSEDLL  420
SGFDLDGLLL GSVPSSEEQV DWSWDVFGLK GCQSSAEASV DSASSPSSSS SSSSSSSLVQ  480
ANIAQQQQQQ NGSATQFVTP STINNIAVES TPKKLTTITT PTLSPRRFNV WRSCE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20222280160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358287.10.0uncharacterized protein LOC112273580
TrEMBLA0A2K1ITX90.0A0A2K1ITX9_PHYPA; Uncharacterized protein
STRINGPP1S187_47V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.18e-27ERF family protein