PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c20_23380V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Trihelix | ||||||||
Protein Properties | Length: 680aa MW: 74761.8 Da PI: 8.2776 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 38.8 | 2.4e-12 | 280 | 357 | 2 | 71 |
trihelix 2 WtkqevlaLiearremeerlrrg........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 W++ e aL++a re++ +l ++ k++ +W ev + + g+ r+pk+ + kw+nl++ +k+i++++kk Pp3c20_23380V3.3.p 280 WQDAEMDALVKAFREVNMKLAAAgkkgkqvfKSANDKWNEVRTLLLASGVDRQPKEIERKWSNLSTAFKQIADWNKKV 357 ******************9998533344444599******************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.4E-9 | 279 | 367 | No hit | No description |
Gene3D | G3DSA:3.40.50.620 | 3.4E-75 | 454 | 670 | IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
SuperFamily | SSF52374 | 1.13E-49 | 457 | 673 | No hit | No description |
Pfam | PF01467 | 3.5E-24 | 461 | 644 | IPR004821 | Cytidyltransferase-like domain |
TIGRFAMs | TIGR00482 | 2.3E-44 | 462 | 670 | IPR005248 | Probable nicotinate-nucleotide adenylyltransferase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009435 | Biological Process | NAD biosynthetic process | ||||
GO:0016779 | Molecular Function | nucleotidyltransferase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 680 aa Download sequence Send to blast |
MSSVLAGCLG FGSYNVSDIG FPSLLCLVPP TVRTGAPWYL PRVYRKPNLD GRRERVTLLH 60 TVCHFDHFSA EMEQGAPPSS AVLEGALSTS TNLEQAEHNF SNQFGRDNFS GGKRQSPYGS 120 AGYTTREGFV REPQVAFPSF VEKGTFPHDG FSRDSVSKDG ESMGLSESET ANKRQKRPDW 180 WQEPQGVDRP SGSPKDVSPS GNVIATPPPA VPSFGGLVMP YRDIRMGALV GIEGNIVEGD 240 LGASSGEGAG VGDDEDGGDG DGKERSDKEG FARKKRAEMW QDAEMDALVK AFREVNMKLA 300 AAGKKGKQVF KSANDKWNEV RTLLLASGVD RQPKEIERKW SNLSTAFKQI ADWNKKVGRP 360 NYWELDEVLK KEKTKAKELP ATFRVQLFEA MAEFMGDRQG ARSRSPAQGT QGTPGHVSVP 420 GLPRPPPAPG VVEMPLPMEK LLVHANLLGD ANHKRSRVVL LAPGSFNPPT YMHLRMFELG 480 RDALTAEGHH VLGGYMSPVN DQFHKKGLAS ADHRIRMCQL AVCDSPTIMV DSWEAKQSSY 540 QRTLTVLTRI EAAVNSSNLA SDEKVRVMLL CGTDLLESLT TPGVWIPDQV RALLQDYGIV 600 CINRNGKDAR RLVFEHDILY NNQRQILVVD EIIQNTISAT AVRRNLARGL SVKYLIPDSV 660 INHIKMHNLY MNASSIQQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gzu_A | 1e-54 | 449 | 674 | 11 | 269 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1gzu_B | 1e-54 | 449 | 674 | 11 | 269 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1gzu_C | 1e-54 | 449 | 674 | 11 | 269 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.8562 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024358093.1 | 0.0 | uncharacterized protein LOC112273477 isoform X1 | ||||
TrEMBL | A0A2K1IWA5 | 0.0 | A0A2K1IWA5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S241_77V6.2 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 7e-06 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c20_23380V3.3.p |