PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c20_23380V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 680aa    MW: 74761.8 Da    PI: 8.2776
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c20_23380V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.82.4e-12280357271
            trihelix   2 WtkqevlaLiearremeerlrrg........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                         W++ e  aL++a re++ +l ++        k++  +W ev   + + g+ r+pk+ + kw+nl++ +k+i++++kk 
  Pp3c20_23380V3.2.p 280 WQDAEMDALVKAFREVNMKLAAAgkkgkqvfKSANDKWNEVRTLLLASGVDRQPKEIERKWSNLSTAFKQIADWNKKV 357
                         ******************9998533344444599******************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-9279367No hitNo description
Gene3DG3DSA:3.40.50.6203.4E-75454670IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF523741.13E-49457673No hitNo description
PfamPF014673.5E-24461644IPR004821Cytidyltransferase-like domain
TIGRFAMsTIGR004822.3E-44462670IPR005248Probable nicotinate-nucleotide adenylyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009435Biological ProcessNAD biosynthetic process
GO:0016779Molecular Functionnucleotidyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MSSVLAGCLG FGSYNVSDIG FPSLLCLVPP TVRTGAPWYL PRVYRKPNLD GRRERVTLLH  60
TVCHFDHFSA EMEQGAPPSS AVLEGALSTS TNLEQAEHNF SNQFGRDNFS GGKRQSPYGS  120
AGYTTREGFV REPQVAFPSF VEKGTFPHDG FSRDSVSKDG ESMGLSESET ANKRQKRPDW  180
WQEPQGVDRP SGSPKDVSPS GNVIATPPPA VPSFGGLVMP YRDIRMGALV GIEGNIVEGD  240
LGASSGEGAG VGDDEDGGDG DGKERSDKEG FARKKRAEMW QDAEMDALVK AFREVNMKLA  300
AAGKKGKQVF KSANDKWNEV RTLLLASGVD RQPKEIERKW SNLSTAFKQI ADWNKKVGRP  360
NYWELDEVLK KEKTKAKELP ATFRVQLFEA MAEFMGDRQG ARSRSPAQGT QGTPGHVSVP  420
GLPRPPPAPG VVEMPLPMEK LLVHANLLGD ANHKRSRVVL LAPGSFNPPT YMHLRMFELG  480
RDALTAEGHH VLGGYMSPVN DQFHKKGLAS ADHRIRMCQL AVCDSPTIMV DSWEAKQSSY  540
QRTLTVLTRI EAAVNSSNLA SDEKVRVMLL CGTDLLESLT TPGVWIPDQV RALLQDYGIV  600
CINRNGKDAR RLVFEHDILY NNQRQILVVD EIIQNTISAT AVRRNLARGL SVKYLIPDSV  660
INHIKMHNLY MNASSIQQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gzu_A1e-5444967411269NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1gzu_B1e-5444967411269NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1gzu_C1e-5444967411269NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.85620.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358093.10.0uncharacterized protein LOC112273477 isoform X1
TrEMBLA0A2K1IWA50.0A0A2K1IWA5_PHYPA; Uncharacterized protein
STRINGPP1S241_77V6.20.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP347225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.17e-06Trihelix family protein