PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c20_23080V3.2.p
Common NamePHYPADRAFT_170330
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family CPP
Protein Properties Length: 571aa    MW: 61703.8 Da    PI: 8.1658
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c20_23080V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR38.81.9e-12124164142
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                         k++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N++e+
  Pp3c20_23080V3.2.p 124 KKCKQCNCKNSRCLKLYCECFASGTYCDG-CNCVNCCNNSEH 164
                         589**************************.********9986 PP
2TCR50.15.6e-16210247138
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkN 38 
                         k++kgC+Ckks ClkkYCeC++a+  Cse+CkC dC+N
  Pp3c20_23080V3.2.p 210 KHNKGCHCKKSGCLKKYCECYQANILCSENCKCVDCRN 247
                         589**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.1E-14124164IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.22125250IPR005172CRC domain
PfamPF036382.1E-8127161IPR005172CRC domain
SMARTSM011147.8E-20210251IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.6E-12213247IPR005172CRC domain
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MQPLKHAMSP VPDGAGASPG DVQYPMFPSL SNMPATRVTS HPSNLDENIL FNPRSTLGSV  60
SASIMAASAS EPARKAVPRQ LDFTSAYGSP SQSPHRSPSI KHSSPRRPVS RSRSALDGKD  120
GTPKKCKQCN CKNSRCLKLY CECFASGTYC DGCNCVNCCN NSEHEVVRQE AVEATLERNP  180
NAFRPKIANS PRILHDGKED VVDRNGSAAK HNKGCHCKKS GCLKKYCECY QANILCSENC  240
KCVDCRNFIT SDERRALFPG DPALGLSFVQ RPSGCASGHM SPLSRKRKTQ DVEYIMPGLQ  300
TNKSNLVKVE NHAATTPKMS IYTASAEHIP EPMVKVVNRS LLADVLHTDV IQDLCKLLVI  360
VSADVQHEVS GIPAVDNGTN NASTVDPTNT EDCPSGKEPS APAAPDRLQA ESTGTTMAEY  420
VRNDPTSTPP VAAVRTAPSP SNQALDVVAK REETRKERPM SPGTLALMCD EKDPLLTAPS  480
SPAHENQLHV VQERVILSEF RDCLRRIISV GNRRAYQLST EASHAEMVSA SKHPTGLSTH  540
TLTPSTLTLP GPSSLDLQLQ STPYNAKLRI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-3112725712130Protein lin-54 homolog
5fd3_B3e-3112725712130Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283288SRKRKT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.18930.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024357760.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA9TIZ70.0A9TIZ7_PHYPA; Predicted protein
STRINGPP1S241_54V6.20.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.13e-84Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]