PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c20_21160V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | STAT | ||||||||
Protein Properties | Length: 800aa MW: 87629.5 Da PI: 6.6125 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 196.3 | 2.9e-61 | 231 | 353 | 1 | 122 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeip 90 ldv ll+alg++++k++e+va L+yadsg++vek+ ddaeapLL+++dGvef+s++rp+kl++GrasfklkisqLsskcdnrLfr++f++p Pp3c20_21160V3.3.p 231 LDVALLDALGRSIHKEMELVALLVYADSGSPVEKPkDDAEAPLLTTFDGVEFPSTERPIKLIHGRASFKLKISQLSSKCDNRLFRVCFDSP 321 89********************************999****************************************************** PP STAT 91 klkkypfleavskpirCisrsrntrsssltkk 122 ++ +ypfl+a+s+pirC+sr+rn+r+ + ++k Pp3c20_21160V3.3.p 322 SMPHYPFLRAFSRPIRCVSRNRNHRTPAGAWK 353 *************************9988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF49899 | 1.38E-7 | 12 | 186 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Gene3D | G3DSA:3.30.505.10 | 1.5E-8 | 670 | 779 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 3.64E-9 | 673 | 736 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 12.525 | 677 | 761 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 800 aa Download sequence Send to blast |
MASSGRKVGA IFGDDDYLSL EKISVRLEKE CLNEEGTFTL CFWVYLLKCS KTGVLIRQGR 60 SEAGSKVPFL TIEEDRKLTL HPLPPPVEDG TSTREEAIIV VADQPCAMEK WVHIGCEIGP 120 DIARLHLNGG VVGERKINHS DANQGFGGDL NTVLLSGGDD NTDCNSVQGY AHYVRVLPQP 180 TVTNHYVKNP PLELSLDGST GASDDHEVEE GGDGVWSVVG GKASCRRNFA LDVALLDALG 240 RSIHKEMELV ALLVYADSGS PVEKPKDDAE APLLTTFDGV EFPSTERPIK LIHGRASFKL 300 KISQLSSKCD NRLFRVCFDS PSMPHYPFLR AFSRPIRCVS RNRNHRTPAG AWKQKPNNPP 360 FPLDGTISPS SKDMISGESH LGNNDAHCNG TLHSGGGVHV SPYLPGQPPL KRARYQEKVP 420 IGAVYIETST DRMGVAGNGE LKASFSGTFQ RSLLPTSPSL GGTFGSPIYG HLPPNGPVCK 480 SPTPLDSNGS LDILNKQDVI KGSSPLEGAG TEVTPNPKSG ATGFSDLLVF KYCLENITCR 540 AAFLKTVITV RNDLDLADFA GKVSHFTGCR HNGYQILMGK NLLRDGNEMW KIMSADSRPV 600 SWSIVVKHIE KSFMKISGCD RRSFSFKDKE FLHQIAKCGE YTSREEFDRL WQWIYPTAVA 660 LSSPQLQSTW ECKDPKWIEG MVSRDEAETL LKTDEAMSTP GTFLLRFANS RMWPHPDAGA 720 LVVSYVGNDR RIHHKLLTLD VESGARYGVG ETLLKPLSEM LLLQPELSQL CRVLNSQAMQ 780 TTADPKEEAF ISEGMDTVP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.1490 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024357244.1 | 0.0 | SH2 domain-containing protein A-like | ||||
Refseq | XP_024357246.1 | 0.0 | SH2 domain-containing protein A-like | ||||
TrEMBL | A0A2K1IW19 | 0.0 | A0A2K1IW19_PHYPA; Uncharacterized protein | ||||
STRING | PP1S40_125V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17040.1 | 3e-68 | SH2 domain protein A |
Link Out ? help Back to Top | |
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Phytozome | Pp3c20_21160V3.3.p |