PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c20_21160V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family STAT
Protein Properties Length: 800aa    MW: 87629.5 Da    PI: 6.6125
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c20_21160V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT196.32.9e-612313531122
                STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeip 90 
                         ldv ll+alg++++k++e+va L+yadsg++vek+ ddaeapLL+++dGvef+s++rp+kl++GrasfklkisqLsskcdnrLfr++f++p
  Pp3c20_21160V3.1.p 231 LDVALLDALGRSIHKEMELVALLVYADSGSPVEKPkDDAEAPLLTTFDGVEFPSTERPIKLIHGRASFKLKISQLSSKCDNRLFRVCFDSP 321
                         89********************************999****************************************************** PP

                STAT  91 klkkypfleavskpirCisrsrntrsssltkk 122
                         ++ +ypfl+a+s+pirC+sr+rn+r+ + ++k
  Pp3c20_21160V3.1.p 322 SMPHYPFLRAFSRPIRCVSRNRNHRTPAGAWK 353
                         *************************9988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498991.38E-712186IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:3.30.505.101.5E-8670779IPR000980SH2 domain
SuperFamilySSF555503.64E-9673736IPR000980SH2 domain
PROSITE profilePS5000112.525677761IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MASSGRKVGA IFGDDDYLSL EKISVRLEKE CLNEEGTFTL CFWVYLLKCS KTGVLIRQGR  60
SEAGSKVPFL TIEEDRKLTL HPLPPPVEDG TSTREEAIIV VADQPCAMEK WVHIGCEIGP  120
DIARLHLNGG VVGERKINHS DANQGFGGDL NTVLLSGGDD NTDCNSVQGY AHYVRVLPQP  180
TVTNHYVKNP PLELSLDGST GASDDHEVEE GGDGVWSVVG GKASCRRNFA LDVALLDALG  240
RSIHKEMELV ALLVYADSGS PVEKPKDDAE APLLTTFDGV EFPSTERPIK LIHGRASFKL  300
KISQLSSKCD NRLFRVCFDS PSMPHYPFLR AFSRPIRCVS RNRNHRTPAG AWKQKPNNPP  360
FPLDGTISPS SKDMISGESH LGNNDAHCNG TLHSGGGVHV SPYLPGQPPL KRARYQEKVP  420
IGAVYIETST DRMGVAGNGE LKASFSGTFQ RSLLPTSPSL GGTFGSPIYG HLPPNGPVCK  480
SPTPLDSNGS LDILNKQDVI KGSSPLEGAG TEVTPNPKSG ATGFSDLLVF KYCLENITCR  540
AAFLKTVITV RNDLDLADFA GKVSHFTGCR HNGYQILMGK NLLRDGNEMW KIMSADSRPV  600
SWSIVVKHIE KSFMKISGCD RRSFSFKDKE FLHQIAKCGE YTSREEFDRL WQWIYPTAVA  660
LSSPQLQSTW ECKDPKWIEG MVSRDEAETL LKTDEAMSTP GTFLLRFANS RMWPHPDAGA  720
LVVSYVGNDR RIHHKLLTLD VESGARYGVG ETLLKPLSEM LLLQPELSQL CRVLNSQAMQ  780
TTADPKEEAF ISEGMDTVP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.14900.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024357244.10.0SH2 domain-containing protein A-like
RefseqXP_024357246.10.0SH2 domain-containing protein A-like
TrEMBLA0A2K1IW190.0A0A2K1IW19_PHYPA; Uncharacterized protein
STRINGPP1S40_125V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP59411618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.13e-68SH2 domain protein A