PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c20_18130V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 636aa    MW: 70508.9 Da    PI: 4.4853
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c20_18130V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.23.1e-4481303128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                         pG rFhPtd e++  yLkk+++g++++  + i  vd+y+vePwdLp +  ++++e yf++ r+kk+++g r+nrat++gyWk+tgkd+ v 
  Pp3c20_18130V3.1.p   8 PGWRFHPTDAEIMGLYLKKQIRGESIQD-NPIVVVDLYSVEPWDLPVEPGGSDQERYFYIARHKKSPKGCRTNRATERGYWKSTGKDRFVQ 97 
                         9************************999.88***************88888999************************************9 PP

                 NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         s  +   g+kktLv+y grap+g++tdWvmheyr+
  Pp3c20_18130V3.1.p  98 S--QYSRGMKKTLVYYIGRAPNGQRTDWVMHEYRM 130
                         9..6779**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-474153IPR003441NAC domain
PROSITE profilePS5100546.3336153IPR003441NAC domain
PfamPF023652.8E-228130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MSTHSRSPGW RFHPTDAEIM GLYLKKQIRG ESIQDNPIVV VDLYSVEPWD LPVEPGGSDQ  60
ERYFYIARHK KSPKGCRTNR ATERGYWKST GKDRFVQSQY SRGMKKTLVY YIGRAPNGQR  120
TDWVMHEYRM ADEVYENLRG EQVPYVLVRV FKKNGPGPNN GARYGGPFIE EPWTPPQDSA  180
KPSSGVLEEA QFEEPGELPG ECPDVRGNMS DFLDEESVTP RCASTGDIQS IFHEMPGVGD  240
VGGEDDGITV EDVFGTEQSR VATVNENWRE EVINSDVMID NNVMASLIDL EFDDDDIDLE  300
SGLISPHVGS VGDISIDDYL EMDDLIVPNE ESIVPESSQI QLLPRSTSTT VQLNPQGDIS  360
RRIRLARRQA SYSQSVDLSD PAPSAPELPS RSFHRSSSSS AFAEFFAEDA TPILDQHGPS  420
QELFIDSGLV DYGALPDPVE DYWSNAAGVQ LWVSNADQLQ SIAQGAQSQS DEPPTIDSRA  480
HDLVAPELTP AASPQAEYSL ERLSWRSYLL PSGITTPMRI RPASARSTSE PIIGALKFPC  540
LKLREFSCVE VAAMDCVEGK LHQGVLSGIM KPCIDGNEQQ GWVQCSKRHP QRQVVKGSRS  600
GFVFACMLGV VSSLIWFFLM QGSWRIVKLV FSVIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-34115315168NAC domain-containing protein 19
3swm_B4e-34115315168NAC domain-containing protein 19
3swm_C4e-34115315168NAC domain-containing protein 19
3swm_D4e-34115315168NAC domain-containing protein 19
3swp_A4e-34115315168NAC domain-containing protein 19
3swp_B4e-34115315168NAC domain-containing protein 19
3swp_C4e-34115315168NAC domain-containing protein 19
3swp_D4e-34115315168NAC domain-containing protein 19
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.106940.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024357598.10.0NAC domain-containing protein 17-like isoform X1
TrEMBLA0A2K1IVP30.0A0A2K1IVP3_PHYPA; Uncharacterized protein
STRINGPP1S44_300V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-51NAC domain containing protein 2