PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c20_17640V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HB-other
Protein Properties Length: 515aa    MW: 54649.2 Da    PI: 6.8525
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c20_17640V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.94.5e-0541753256
                        HHHHHC..........TS-HHHHHHHHHHHHHHHH CS
            Homeobox 32 eLAkkl..........gLterqVkvWFqNrRakek 56
                         LA+k            ++ +qV +WFqNrR  +k
  Pp3c20_17640V3.2.p 41 TLADKFtnssersgqrPVQWKQVWNWFQNRRHAQK 75
                        555555555555555556779**********8877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-41377IPR009057Homeodomain-like
SuperFamilySSF466891.03E-52275IPR009057Homeodomain-like
PfamPF167193.7E-38114240IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MGRTPMSGGT AFRFLPAEVA DMEKALDASN GATPARSIVE TLADKFTNSS ERSGQRPVQW  60
KQVWNWFQNR RHAQKAKIDK LKGVGPGGET PSAAKSVVVA GPSAAKKPNV HVPMDFEAKS  120
ARDGAWYDVS AFINKRTGEN GEPEVRVRFA GFGSEEDEWV NIATAVRQRS LPCETTECVA  180
VLPGDLILCF QEGSEQALYF DADILDVQRR RHDVRGCRCR FWVRYRHDQT EEVVPLRKVC  240
RRPETEQRLQ QAREANASSN KFPNKDIVVE ASSRPLNGTP NTIAAPPMPL TTPATPLQLS  300
AAFTATPLPG ASSNFHTPIQ PGTTTPGLTP VQPLPMQPLN TPDVKSSIPH QAPPSNTAAT  360
HQGTTPVPAV SASQGLLPSA PTAAVTQPMA STSAQQQTTT SIESSLAHQL SISAPAQHHA  420
PPVSNAVEPA QQQLAADVAV IKPGVSRASD EEAVASTGVP EIDNVDSVKP TLAVEQTGPS  480
TVTQVDSSTT VGLSTGTSGG TTPKEEEKPL AGKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A1e-471142444134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-471142444134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-471142444134SHH1 SAWADEE
4iur_B1e-471142444134SHH1 SAWADEE
4iut_A1e-471142444134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-471142444134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-471142444134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-471142444134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-471142444134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-471142444134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358426.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
RefseqXP_024358427.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
RefseqXP_024358428.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
RefseqXP_024358429.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
SwissprotQ8RWJ71e-108SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2K1IVL70.0A0A2K1IVL7_PHYPA; Uncharacterized protein
STRINGPP1S44_245V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.13e-95sequence-specific DNA binding transcription factors;sequence-specific DNA binding