PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c20_1403V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB_related

Protein Properties

Length: 1140aa MW: 126986 Da PI: 5.5638

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c20_1403V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27	1.1e-08	278	323	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqk 46 W++eE+e +++v ++G+g+Wk I + +R++ q+k++++ Pp3c20_1403V3.1.p 278 LWSAEEEEAVKRGVIKFGPGSWKEIKEDDStlANRSAVQIKEKYRL 323 6***********************9888888*********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	4.1E-6	275	327	IPR001005	SANT/Myb domain
Pfam	PF00249	4.6E-7	277	322	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-9	277	322	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.62E-10	278	335	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.748	279	325	IPR017877	Myb-like domain
CDD	cd11660	6.31E-15	279	325	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1140 aa Download sequence Send to blast
MTFQVEDTEV DPQLGYPSAY PNLCRHAHAT GLPLPFTEGP PQRFLPYSPQ ADDFQHLKEW 60 DTVFPVLAER EKESSTAQKF AEELWQQLDH LGNAGFDPAK FRVDPYGNVV YWNADPSSPL 120 AWDIDHWFPR SRGGKTKLPN LRIVQWQAYL RKRNRLEFLV PWWDLQHGCS INQFLSAFAA 180 KNADFRKRSF ALFFEGGEDE SVAREHVGEC RPWPQQFREK KALCGLAAAA IVNVSKDNAE 240 AGGQAASVSS KAPTSSDGSH ILGTYPFGAI LGSSPTQLWS AEEEEAVKRG VIKFGPGSWK 300 EIKEDDSTLA NRSAVQIKEK YRLMRAVSRN LGRESNGPGR NDLLGRQSAA TTALQKELRV 360 KIMREEEKRE KEEELAQLEE TVMKLKLENE KERIKSLELE ALLKKQKHRV EKQRKWAESQ 420 SSYRLCLERV LRDTMHQTMS YKEQARLTRE ACNVLIACLD SQKASCEAME SDLLQRHAQR 480 ELLEAAAARV NGSKRTTLVQ KKLVTQGRDI VDVSSCVSLR ATDQEDDEEE EKLVMTANQL 540 SGSDTGDEGE DEVYNLRREY QQAAARKSLV RHAIKVAMQV GNAKDSMDLS PWEAPPGVEA 600 KTSCPDFFID STTGARLRGD VPQPHQRYEA GSETPESGSD SDFADDEMSP AIRLSSDGAC 660 KDNNVLVSEL SQFHDGPTSE LRDFCTRNSK PGLRALDMAG YDAFEHSQSP VAEPTLDISV 720 PSAGESRSDS KREVQKDVIM VQTDSFKANA DTAALSKQQY LDELLQQIRF QIPTSEAAGE 780 AMADGPPWMS EGNLDELMEQ VLATHLDKVR RNDARQHQSA DADDEELKDI GKSNLDKWLQ 840 VLLFKDVESA RSSPGRDAPL QTISPALSSI SVAAMRKSLE LASHQDRMSR EGENAERPKS 900 LWGTLLKKLS VKHQPGQENT VFEPKDDYEI VDEARNLPIP HRDADISDVV KTLLKTSPAT 960 VPVSEHNHSN GNLAESRRSS CDSACALPGW PGGFQLNTIA SSHCPKDVIT GISKEPSSLP 1020 NDSASIWATD TRVETGSHVH ALEMHPHFLE ERHCQRPLSD VDEISETESV DSPNPPCSLP 1080 APEGKSLPHR PKKSRSIKVA GFVGWKKAPK SKLETKSSQD DELPRRARSD PPPPVKMDR*

Sequence ? help Back to Top

Protein Sequence Length: 1140 aa Download sequence Send to blast

MTFQVEDTEV DPQLGYPSAY PNLCRHAHAT GLPLPFTEGP PQRFLPYSPQ ADDFQHLKEW  60
DTVFPVLAER EKESSTAQKF AEELWQQLDH LGNAGFDPAK FRVDPYGNVV YWNADPSSPL  120
AWDIDHWFPR SRGGKTKLPN LRIVQWQAYL RKRNRLEFLV PWWDLQHGCS INQFLSAFAA  180
KNADFRKRSF ALFFEGGEDE SVAREHVGEC RPWPQQFREK KALCGLAAAA IVNVSKDNAE  240
AGGQAASVSS KAPTSSDGSH ILGTYPFGAI LGSSPTQLWS AEEEEAVKRG VIKFGPGSWK  300
EIKEDDSTLA NRSAVQIKEK YRLMRAVSRN LGRESNGPGR NDLLGRQSAA TTALQKELRV  360
KIMREEEKRE KEEELAQLEE TVMKLKLENE KERIKSLELE ALLKKQKHRV EKQRKWAESQ  420
SSYRLCLERV LRDTMHQTMS YKEQARLTRE ACNVLIACLD SQKASCEAME SDLLQRHAQR  480
ELLEAAAARV NGSKRTTLVQ KKLVTQGRDI VDVSSCVSLR ATDQEDDEEE EKLVMTANQL  540
SGSDTGDEGE DEVYNLRREY QQAAARKSLV RHAIKVAMQV GNAKDSMDLS PWEAPPGVEA  600
KTSCPDFFID STTGARLRGD VPQPHQRYEA GSETPESGSD SDFADDEMSP AIRLSSDGAC  660
KDNNVLVSEL SQFHDGPTSE LRDFCTRNSK PGLRALDMAG YDAFEHSQSP VAEPTLDISV  720
PSAGESRSDS KREVQKDVIM VQTDSFKANA DTAALSKQQY LDELLQQIRF QIPTSEAAGE  780
AMADGPPWMS EGNLDELMEQ VLATHLDKVR RNDARQHQSA DADDEELKDI GKSNLDKWLQ  840
VLLFKDVESA RSSPGRDAPL QTISPALSSI SVAAMRKSLE LASHQDRMSR EGENAERPKS  900
LWGTLLKKLS VKHQPGQENT VFEPKDDYEI VDEARNLPIP HRDADISDVV KTLLKTSPAT  960
VPVSEHNHSN GNLAESRRSS CDSACALPGW PGGFQLNTIA SSHCPKDVIT GISKEPSSLP  1020
NDSASIWATD TRVETGSHVH ALEMHPHFLE ERHCQRPLSD VDEISETESV DSPNPPCSLP  1080
APEGKSLPHR PKKSRSIKVA GFVGWKKAPK SKLETKSSQD DELPRRARSD PPPPVKMDR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024358211.1	0.0	uncharacterized protein LOC112273539
TrEMBL	A0A2K1ITK5	0.0	A0A2K1ITK5_PHYPA; Uncharacterized protein
STRING	PP1S152_10V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2877	2	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	4e-08	telomere repeat binding factor 1

Link Out ? help Back to Top
Phytozome	Pp3c20_1403V3.1.p