PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c20_12200V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 589aa    MW: 63212.2 Da    PI: 6.4261
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c20_12200V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.42.6e-32339397159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dgy+WrKYGqK vk+s++prsYYrCt+  Cpv+k+versaed+ +v++tYeg+H+h 
  Pp3c20_12200V3.1.p 339 MEDGYKWRKYGQKAVKNSPHPRSYYRCTHMMCPVRKRVERSAEDTGLVITTYEGTHTHV 397
                         58********************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-34324399IPR003657WRKY domain
SuperFamilySSF1182902.35E-28332397IPR003657WRKY domain
PROSITE profilePS5081130.481334399IPR003657WRKY domain
SMARTSM007741.5E-38339398IPR003657WRKY domain
PfamPF031069.8E-26340396IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MSSASASLLV RDNDEGGNHM RGREADLERL MRSLSEEVNS QNQSQNPQVG HEVQQNFLQP  60
STVFPGQRDF SVSFSQSQPS FLLELLSMSS PAVGWNGCAL PDPALYSAAS REFKSSTGNT  120
GFATSSIQAQ SQQDGLWTSE PDYPPWFSQE SVESRHVNMY VDRLQDLLST PASWEQLQVV  180
SSSPAFTIDM TMGAPTEKTS HSSGVTAVMH SPRASPGVMG SPSTSTPLNS AASTLPSTPN  240
SSMSYGSFSD AAAEEGHSHH GIGGSISRPP SLQQPQPVAG PSGRSSTKRK TLDCGMEESC  300
DEIQSHDAKK SCSKLRRKGL KRVREPRYAI QTPSDVEIME DGYKWRKYGQ KAVKNSPHPR  360
SYYRCTHMMC PVRKRVERSA EDTGLVITTY EGTHTHVSPV TGSRGPSDEP LLFASGEHPP  420
GGAPFHPPTS TSTSSFPLQD VALPAPSASV VKYEIPTTMD AATSSQHKSS QGGPLRPTPS  480
INQVDPASLL GGPVPASGTA IPPLPDSLLR AQKLLDGGQD EAQPQLDGDT RFRSGYLMKD  540
LGHLMQDVMC WGNTLPHHAS RAQVIHPLLS TTPSSGCFST EGLLEDIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-24327399274WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358453.10.0probable WRKY transcription factor 33
RefseqXP_024358455.10.0probable WRKY transcription factor 33
TrEMBLA0A2K1IV100.0A0A2K1IV10_PHYPA; Uncharacterized protein
STRINGPP1S166_34V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.15e-36WRKY family protein