PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c20_11430V3.1.p

Common Name

PHYPADRAFT_88203

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 516aa MW: 56622.1 Da PI: 8.1685

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c20_11430V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.5	2.6e-32	295	350	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Pp3c20_11430V3.1.p 295 KARRCWSPELHRRFVSALQQLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 350 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.889	292	352	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-29	293	353	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.77E-17	293	353	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-26	295	350	IPR006447	Myb domain, plants
Pfam	PF00249	3.0E-7	297	348	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MGSPANLALG PQVSTITSTI ETALNCTVSA DGLEADEIQK IAAHLRALQE ERGKIEAFKR 60 ELPLCMQLLD EAIETAINKV MVDQCSPTAS LQTSVLDAQD SDYERPKRTL VLENFMPLKR 120 RWEKQLKEKI FQNDAGNNSQ QHEDKVVIGR PAWMKETQLW TKQSESIDYE KASPSRGSRR 180 QVEFKCSEQD RPLTSSRLLL NSKDRQGGAF VPFNREKQLP SPPFSSQSTG PASDAAGFST 240 SSAVRTPSRM GHTIESFDIG RVNGNVHVRD HSSDARNSID HSVQTRTGAN QPQRKARRCW 300 SPELHRRFVS ALQQLGGSQV ATPKQIRELM KVDGLTNDEV KSHLQKYRLH TRRPSPSPPS 360 PSHAPQLVVV GWVRPEFTAV EGAASQASTG DNPLPGISNE CVPSQSTGQP QKQSPPNFQK 420 HLPAVSTSQT SLRGPSPVGV DSPHSSSDSY IDESDDEQDG NCTSSGENGR QYECNEKPLQ 480 SARESKGSTT CLADIDATIN PQMKLRILRK TKAAA*

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MGSPANLALG PQVSTITSTI ETALNCTVSA DGLEADEIQK IAAHLRALQE ERGKIEAFKR  60
ELPLCMQLLD EAIETAINKV MVDQCSPTAS LQTSVLDAQD SDYERPKRTL VLENFMPLKR  120
RWEKQLKEKI FQNDAGNNSQ QHEDKVVIGR PAWMKETQLW TKQSESIDYE KASPSRGSRR  180
QVEFKCSEQD RPLTSSRLLL NSKDRQGGAF VPFNREKQLP SPPFSSQSTG PASDAAGFST  240
SSAVRTPSRM GHTIESFDIG RVNGNVHVRD HSSDARNSID HSVQTRTGAN QPQRKARRCW  300
SPELHRRFVS ALQQLGGSQV ATPKQIRELM KVDGLTNDEV KSHLQKYRLH TRRPSPSPPS  360
PSHAPQLVVV GWVRPEFTAV EGAASQASTG DNPLPGISNE CVPSQSTGQP QKQSPPNFQK  420
HLPAVSTSQT SLRGPSPVGV DSPHSSSDSY IDESDDEQDG NCTSSGENGR QYECNEKPLQ  480
SARESKGSTT CLADIDATIN PQMKLRILRK TKAAA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-14	295	348	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-14	295	348	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-14	295	348	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-14	295	348	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-14	295	348	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-14	295	348	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-14	295	348	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-14	295	348	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-14	295	348	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-14	295	348	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-14	295	348	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-14	295	348	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024357508.1	0.0	transcription factor NIGT1-like isoform X1
TrEMBL	A9T548	0.0	A9T548_PHYPA; Predicted protein
STRING	PP1S166_107V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP4303	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	6e-54	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c20_11430V3.1.p
Entrez Gene	5936948

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]