PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c20_1120V3.2.p
Common NamePHYPADRAFT_172161
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family BES1
Protein Properties Length: 359aa    MW: 37858.4 Da    PI: 8.5976
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c20_1120V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822175.82.1e-54299197
             DUF822  1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspess 93
                       ++++r ptwkErEnnkrRERrRRaiaaki+aGLR +Gnyklpk++DnneVlkALc eAGw+ve+DGttyrkgskp+ + +e+  s ++asp+ss
  Pp3c20_1120V3.2.p  2 TSGTRLPTWKERENNKRRERRRRAIAAKIFAGLRLYGNYKLPKHCDNNEVLKALCVEAGWTVEEDGTTYRKGSKPPaQPMEVCTSPSEASPTSS 95
                       5899************************************************************************99999999999******* PP

             DUF822 94 lqss 97
                       +  +
  Pp3c20_1120V3.2.p 96 YPGA 99
                       9833 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.2E-523125IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MTSGTRLPTW KERENNKRRE RRRRAIAAKI FAGLRLYGNY KLPKHCDNNE VLKALCVEAG  60
WTVEEDGTTY RKGSKPPAQP MEVCTSPSEA SPTSSYPGAA EGTSLIPWLK GLSSNGGSGT  120
ATPSSSAGLP PLHVMHGGSS SAPVTPPLSS PTHRGPPVKP DWDHIKDADH HSHGFPPSGP  180
PTWNHHPFLA AAAAAAQAAA SNQSHLRPGY CDTPDGARTP IEEAESEISP GTALEFATVC  240
GSNSSKWANG VRVRTSSGGR LLGGMAGLGP FPSANNDSPL ETFSHAWRNP MQKSISMPVS  300
PVSSRMKGSF GDRLGRCPSE LELSGAVQGL GSLWELDGVV PEVGAKRKLP ADDLELKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-22676372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-22676372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-22676372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-22676372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.55700.0gametophore| protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024357987.10.0BES1/BZR1 homolog protein 4-like
TrEMBLA0A2K1ITH70.0A0A2K1ITH7_PHYPA; Uncharacterized protein
TrEMBLA9TVD00.0A9TVD0_PHYPA; Predicted protein
STRINGPP1S335_68V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.14e-41BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]