PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c20_10790V3.3.p | ||||||||
Common Name | PHYPADRAFT_90051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C2H2 | ||||||||
Protein Properties | Length: 358aa MW: 39112.1 Da PI: 6.5078 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.0003 | 63 | 85 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+++F + L H+++H Pp3c20_10790V3.3.p 63 YECRFCNMRFAKSQALGGHMNRH 85 99********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.51E-5 | 60 | 90 | No hit | No description |
PROSITE profile | PS50157 | 11.053 | 63 | 90 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 65 | 85 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010094 | Biological Process | specification of carpel identity | ||||
GO:0010097 | Biological Process | specification of stamen identity | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MPSKPSFPQP SPLLLPLSAP TMDSHSDDVQ TPTPDNSGSK RKRRSVDEGS TTDEEGDVSK 60 TLYECRFCNM RFAKSQALGG HMNRHRQERE KEQYQHAQQL VSSMAQQQQM PRTWTSMAAE 120 LNPLSAGVAL ARLSTQLTAN PRPDGSRSQI PPQISFNSTP PPINMSSSSS IPSSMSSSYF 180 FPSSSSSNNL HHLQWNVDEF NTTIPRSGSQ EGLNVMDFSL QGTSLRDDFL SDVLQSRQDG 240 GSFMGSQFSN MPPLMSRGLS SVETGSFYSG GEESVQEKSG TAGLQFDNNH SSLQQSSIRM 300 NGMLQHSTCS SSPLHSSLMN SDIHHDAKSL ANSFARVRTS APGHTFLMQC NDTVEFN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024356943.1 | 0.0 | uncharacterized protein LOC112272956 isoform X1 | ||||
TrEMBL | A0A2K1IUW2 | 0.0 | A0A2K1IUW2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S192_8V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05120.1 | 5e-10 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c20_10790V3.3.p |
Entrez Gene | 5938676 |
Publications ? help Back to Top | |||
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