PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_950V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family CO-like
Protein Properties Length: 475aa    MW: 51989.7 Da    PI: 6.302
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_950V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.14.3e-092265438
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.........Ht 38
                     r C+ + +k ++++C  ++ +lC++C ++ H+          H+
  Pp3c1_950V3.1.p 22 RACDVCASKSARWYCGADRAYLCDKCDTQVHSAnalarrherHR 65
                     68****************************95567777744455 PP
2CCT64.53.1e-22428471144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RYk Kr++R+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Pp3c1_950V3.1.p 428 REARVMRYKAKRRSRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 471
                      9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.5991966IPR000315B-box-type zinc finger
SMARTSM003362.9E-71966IPR000315B-box-type zinc finger
PfamPF006431.0E-72263IPR000315B-box-type zinc finger
CDDcd000211.55E-62263No hitNo description
PROSITE profilePS5101715.666428470IPR010402CCT domain
PfamPF062031.4E-17428470IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MTTKGASRSA ATAMAIAGRA SRACDVCASK SARWYCGADR AYLCDKCDTQ VHSANALARR  60
HERHRLTPSG VAMQPARKPA ADLMKDKTFS QRKHTISKKT HASPVQVLPP RKRSRTSRPH  120
PHRQAQHITE ATPASKLHNA KDVEVEDEFL TVTDAFDTED FLVDDTQEVP SLITVAQDSS  180
PSSSELDLSS DFSPELNSDA QGGSSSPSSD SFVAYFKGKA AQDDCFSDDV MSDQFLVPDA  240
FDDGINICCD MDGNISLAGD ACFISGDIPG LDGFEDFGSR ELSNNTYSFD LALRDSLPGA  300
FEGDGAATSD ARGTSLKQNV VGVENDQFST GPFANFFAKN RKSETVHSSP ENIKNEAKEI  360
LRCCLEGLTE EDMRTVPSLR LNYEDVITAW SDRGEPWVNP ENFPSEATDV GLVPDMGQGG  420
ADDGHGGREA RVMRYKAKRR SRLFSKKIRY EVRKLNAEKR PRMKGRFVKR TKSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1438454RRSRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392069.10.0zinc finger protein CONSTANS-LIKE 6-like
TrEMBLA0A2K1L6G50.0A0A2K1L6G5_PHYPA; Uncharacterized protein
STRINGPP1S200_107V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.17e-25B-box type zinc finger protein with CCT domain