PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c1_8930V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 468aa MW: 51820.4 Da PI: 8.4953

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c1_8930V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36	1.2e-11	264	314	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h Er+RR+ +N+ + + r llP++ s K +K++++ v+YI+ Lq Pp3c1_8930V3.1.p 264 QRKSHIWSERQRRRSMNQLYTTMRALLPHQ----SVKTDKSTVVLDIVNYIRTLQ 314 799************************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.03E-11	262	318	No hit	No description
PROSITE profile	PS50888	13.408	263	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.6E-12	264	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.5E-9	264	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-13	264	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-7	269	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MYDQQQGMQS FSTGYVFPDR LEQQSKMREP VGDDFFFNRD HGSSGSFLRK PQPLCRMVGY 60 NVTHLNCLPC FPQQQSQTPP LPLIDRDIQP GRRTSCGDFL SAESTFRFPP QMQNANNVVP 120 GSLELNQGVT LGHRALSFVR GDPPMEQASK QADDQMADFK VTCFVHEQDG SDLRQTWCQP 180 SDQVITNLPS SGPAQASRHH CLGPAPKRTY PYSTTTFESG GESNRPAHHI STSGRRRELA 240 PKKGRRHMIP KRTAQAVLSN VVSQRKSHIW SERQRRRSMN QLYTTMRALL PHQSVKTDKS 300 TVVLDIVNYI RTLQAELEML SRRRDRLVTT RNLHQKSSQA FSAHGLTCVD HTSDASVLTA 360 VTTLPPPGSA SCLASFLGNN VAIHICGHHL FVTITAPAQL CLLTHIIATL DSYNLNVLSI 420 AVNSRDNTTA YSLSVEASQV AEAIGDDLHT ALQIVINNFS SSEIEAA*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MYDQQQGMQS FSTGYVFPDR LEQQSKMREP VGDDFFFNRD HGSSGSFLRK PQPLCRMVGY  60
NVTHLNCLPC FPQQQSQTPP LPLIDRDIQP GRRTSCGDFL SAESTFRFPP QMQNANNVVP  120
GSLELNQGVT LGHRALSFVR GDPPMEQASK QADDQMADFK VTCFVHEQDG SDLRQTWCQP  180
SDQVITNLPS SGPAQASRHH CLGPAPKRTY PYSTTTFESG GESNRPAHHI STSGRRRELA  240
PKKGRRHMIP KRTAQAVLSN VVSQRKSHIW SERQRRRSMN QLYTTMRALL PHQSVKTDKS  300
TVVLDIVNYI RTLQAELEML SRRRDRLVTT RNLHQKSSQA FSAHGLTCVD HTSDASVLTA  360
VTTLPPPGSA SCLASFLGNN VAIHICGHHL FVTITAPAQL CLLTHIIATL DSYNLNVLSI  420
AVNSRDNTTA YSLSVEASQV AEAIGDDLHT ALQIVINNFS SSEIEAA*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024374595.1	0.0	uncharacterized protein LOC112281865
Refseq	XP_024374604.1	0.0	uncharacterized protein LOC112281865
Refseq	XP_024374613.1	0.0	uncharacterized protein LOC112281865
TrEMBL	A0A2K1L7M7	0.0	A0A2K1L7M7_PHYPA; Uncharacterized protein
STRING	PP1S38_120V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1226	15	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	3e-13	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pp3c1_8930V3.1.p