PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_7800V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 429aa    MW: 47102 Da    PI: 4.8949
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_7800V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78e-20326377155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++y+GVr+++ +g+++AeIrd s+ng  +r++lg+f++ae+Aa a+++a+++++g
  Pp3c1_7800V3.1.p 326 PHYRGVRQRP-WGKFAAEIRDSSKNG--ARVWLGTFDSAEQAALAYDRAALNMRG 377
                       68********.**********87887..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.99E-31326385No hitNo description
PfamPF008475.6E-15326377IPR001471AP2/ERF domain
SMARTSM003806.5E-37327391IPR001471AP2/ERF domain
PROSITE profilePS5103223.209327385IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-22327386IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-31327386IPR001471AP2/ERF domain
PRINTSPR003673.2E-10328339IPR001471AP2/ERF domain
PRINTSPR003673.2E-10351367IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MTAEVEFQQL DFLSRGLQSR EGVCYPQYTA DLKVSESWGH HFSVDDVDQQ QFFPQSNYDL  60
SPSTYLAPDF SKSPFLLDPY SFHSSPDQLN DGAYSLPCSS GQLSDGARTS GVTSLDETDE  120
VCSISSQNKS KGLNKLTSTL KRKFGECFIE EVRSTMKPFV KELNVDDYLC LDNVQEQPAS  180
AWGAETSTPE NAFTVTHSAT KLSSNSLPNQ RPALGFLYIP SLAESDIPAP VPLSPWRSKR  240
VQCQTPDEFR TESSKAAEPL SLEPNESEEA FNSFIKSYWN STTDSSTPQE VASVPVESID  300
DKVEQECQTS TITKTKPANK KTSSQPHYRG VRQRPWGKFA AEIRDSSKNG ARVWLGTFDS  360
AEQAALAYDR AALNMRGSRA LLNFPLKATT ALSNPESLPP PPVSSSTSRT SKKSSAASAS  420
LLSQQQQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-32327387262ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.6380.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385422.10.0ethylene-responsive transcription factor ERF062-like
TrEMBLA0A2K1L7F20.0A0A2K1L7F2_PHYPA; Uncharacterized protein
STRINGPP1S38_257V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.18e-33ethylene responsive element binding factor 1