PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_7740V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 451aa    MW: 48108.9 Da    PI: 7.9992
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_7740V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-18311362155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++y+GVr ++ +g+++AeIrdp +ng  +r++lg+f+tae A  a+++a++kl+g
  Pp3c1_7740V3.2.p 311 PHYRGVRHRP-WGKFAAEIRDPAKNG--ARVWLGTFDTAELAGLAYDRAALKLRG 362
                       68*****888.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-12311362IPR001471AP2/ERF domain
CDDcd000181.48E-28311370No hitNo description
SuperFamilySSF541711.37E-21312371IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-29312371IPR001471AP2/ERF domain
SMARTSM003804.8E-34312376IPR001471AP2/ERF domain
PROSITE profilePS5103223.762312370IPR001471AP2/ERF domain
PRINTSPR003672.1E-12313324IPR001471AP2/ERF domain
PRINTSPR003672.1E-12352372IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MSAAVHASQW RGAQVGGLWY EDAERARRTH VDTARHCAQL DDDGVIEPGP EAMRAPESPF  60
QFAVPDCLPT PNAGFALDYL SLMESPKLDS QFDFEHHSSD NGSTGESLLV AEGSWKASNA  120
REPSSGLSWA TSVSQSLKKA LGTNLAEQMR ETVGAFVNTL NVAEYSTLGS VNAMKSTKSR  180
PCRSLKPLLA LDIPGKVQTR TAVVGDTVNV AVVRTVSSPS GSKRVQFQGS ESIAAQFSEV  240
DEALPPLDGS IGDDMSSLFD LLEEPASQPK SAGADAKESA GEVGFKVSPP SQHEKMTVQR  300
KGAKQQTAWQ PHYRGVRHRP WGKFAAEIRD PAKNGARVWL GTFDTAELAG LAYDRAALKL  360
RGSRALLNFP LRATTALSDP ESFPAPPVSS STRKFAQGSA GSSTGRQSLG LSYTARYPAV  420
EMAGTFVPKK RVGLGSGTDA TKRLRVEDLC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-32312375568ATERF1
3gcc_A8e-32312375568ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396614.10.0uncharacterized protein LOC112292405
TrEMBLA0A2K1L7C30.0A0A2K1L7C3_PHYPA; Uncharacterized protein
STRINGPP1S38_262V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.18e-34ethylene responsive element binding factor 1