PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_7300V3.5.p
Common NamePHYPADRAFT_162038
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 549aa    MW: 60783.7 Da    PI: 9.8624
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_7300V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1383.6e-12345403563
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       k+++r   NR +A+rsR RK+++i eLe  v +Le+e  +L  ++  +  e a+l +e+
  Pp3c1_7300V3.5.p 345 KKAKRILANRQSAQRSRVRKLQYISELEMNVSVLESEVASLSPKVGYYDHERARLSAEN 403
                       99****************************************99999999999988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-11341405IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.749343406IPR004827Basic-leucine zipper domain
PfamPF001707.6E-11345402IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.57E-11345399No hitNo description
Gene3DG3DSA:1.20.5.1702.3E-9345411No hitNo description
CDDcd147032.36E-23346397No hitNo description
PROSITE patternPS000360348363IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MEESKQPGSK AMQGFPRMDN VSTGKYGDRS VNWAHPMNNS THLPPKSPHG GYSMFSSSSL  60
FENNGGLNFP PCQPIRGGEH RRSPSAGYVP QGQPTWQSVR LASSDGIVVK KCSHRRSSSD  120
SVAFVDNSYQ CMNYLEHVTE EDEFVFQEPP ISAYRPAHRK GLSADYDSYS SISPTGNQNP  180
QYKLLETHRL YPGKSMRGDH NINRLGRDYV PRIRDSEPFQ RQQSRHENVA AYNRVGSNLA  240
KSVPQEDSRN LGKAKKHVTL AIPNLKSDGT SSSKGRVHNL GTNSTLENRS TASESNSLSD  300
DSNDDVRPKS YEKLRGDSEL RTEGDGNAPA LAHDDCTSSE QLDPKKAKRI LANRQSAQRS  360
RVRKLQYISE LEMNVSVLES EVASLSPKVG YYDHERARLS AENVLLKQKL AALTKSQRLK  420
EAHSESLKSE AHRLLQLYNQ QQQQTQHHAE RRSLSADILD LQLMRFSQLD IGPQIPKPKS  480
PNGYTSVVRP SSGRPSLYPS KVISPPHDRI ISRPSSHTIP PSCMAPGGKT LAGGMMGGSS  540
TSFMVHNL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.61260.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387430.10.0uncharacterized protein LOC112287962 isoform X1
RefseqXP_024387438.10.0uncharacterized protein LOC112287962 isoform X1
TrEMBLA0A2K1L7770.0A0A2K1L777_PHYPA; Uncharacterized protein
STRINGPP1S38_310V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42380.25e-26bZIP family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]