PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_6880V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family E2F/DP
Protein Properties Length: 434aa    MW: 47554.4 Da    PI: 5.0612
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_6880V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.12.5e-27107172171
           E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       r+++sL+llt+kf++l++++++g+++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+irwkg
  Pp3c1_6880V3.5.p 107 RYDSSLGLLTKKFIDLIKQADDGVLDLNKAADTL---HV--QKRRIYDITNVLEGIGLIEKKLKNRIRWKG 172
                       6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.0E-29103173IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.22E-17107170IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.8E-34107172IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.0E-24109172IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146605.29E-45183288No hitNo description
SuperFamilySSF1440741.73E-30187288No hitNo description
PfamPF164211.7E-31190287IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MGAGWAGAGA EREARPICRK LCNCASLLSS RLVMKRRNEC EEHHVEMNGW NGYTNSDLSP  60
APTPTGPRGR GSRAKTVKQT KNGPQTPGPS GIGSPTSSAP TPTSTCRYDS SLGLLTKKFI  120
DLIKQADDGV LDLNKAADTL HVQKRRIYDI TNVLEGIGLI EKKLKNRIRW KGLGMVRNAE  180
AKDDAAGLLA EVEDLRIKEK KLDESISEMR ERLRSLSEDE HNKQWLYVTE DDIKNLHCFQ  240
NETLIAIKAP LGTTLEVPDP DEAVEYPHRR FQILLRSTLG PIDVYLVSRF EGRTEVPMET  300
LPDSQEAGPS SSVDGMSHQE NMVMVPEVGY GLSDLVPPVS HESASQAPEP TGSHPDFAGG  360
IMRIAPAEVN TDTDYWLLSD AGVGISDMWR SDPSNAMWDE VVRLNPEFGS ENIGSPRPHT  420
PPSNNALEVD PVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A7e-26102174275PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.30260.0protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00661PBM25215497Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4289510.0AJ428951.1 Physcomitrella patens mRNA for putative E2F transcription factor (e2f gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387489.10.0transcription factor E2FB-like isoform X2
TrEMBLQ8GU410.0Q8GU41_PHYPA; Predicted protein
STRINGPP1S38_356V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-101E2F transcription factor 1