PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_5010V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 28077.4 Da PI: 8.081 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.1e-17 | 75 | 123 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr + +grWv eIr p + +k+++lg++ +aeeAa a++aa ++l+g Pp3c1_5010V3.2.p 75 YKGVRMRT-WGRWVTEIRQPQT---KKSIWLGSYRSAEEAAHAYDAAVLCLRG 123 9****998.**********943...4*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.193 | 74 | 131 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-20 | 74 | 133 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.4E-29 | 74 | 133 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-30 | 74 | 137 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.18E-26 | 75 | 132 | No hit | No description |
Pfam | PF00847 | 3.4E-11 | 75 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-11 | 75 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-11 | 113 | 133 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MHASFMINVA VSNSGTKLGV FQDQESRRLG SNWQVPVGKL RPPKSFGSPR ESAHMSGSHA 60 ESGSSRRKHK TVRLYKGVRM RTWGRWVTEI RQPQTKKSIW LGSYRSAEEA AHAYDAAVLC 120 LRGPTAKLNF PDERPAIPPG SPGKYSIREV QAAAAGAAAA SAGRRFSYSE FMSATTPPES 180 IDPAPEHINC PSDSRGTSPL PADRIYPCEF DEDPLQATWE VPDEMMVPLT PREVLYDSDS 240 YDGFPRDDLP PWNT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-12 | 75 | 133 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00463 | DAP | Transfer from AT4G31060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024359814.1 | 1e-52 | ethylene-responsive transcription factor ERF017-like | ||||
TrEMBL | A0A2K1L6Y6 | 0.0 | A0A2K1L6Y6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S45_159V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06746.1 | 1e-18 | related to AP2 9 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_5010V3.2.p |