PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_4970V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB | ||||||||
Protein Properties | Length: 486aa MW: 54016.3 Da PI: 6.6692 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 9.5e-18 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv +++++G g+W++ + + g+ R++k+c++rw +yl Pp3c1_4970V3.2.p 18 KGPWTPDEDQKLVAYIQKHGHGSWRSLPLHAGLQRCGKSCRLRWTNYL 65 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.3 | 3.5e-18 | 71 | 116 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+++eEd+ +v++++ lG++ W++Ia++++ +Rt++++k++w+++l Pp3c1_4970V3.2.p 71 RGRFSQEEDQMIVHLHAILGNR-WSAIASHLP-RRTDNEIKNYWNTHL 116 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 10 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.514 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.67E-31 | 15 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-13 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-16 | 18 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.64E-11 | 20 | 65 | No hit | No description |
PROSITE profile | PS51294 | 27.294 | 66 | 120 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-27 | 69 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-18 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-16 | 71 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.13E-13 | 73 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MTRAPVSSAN EKDASLKKGP WTPDEDQKLV AYIQKHGHGS WRSLPLHAGL QRCGKSCRLR 60 WTNYLRPDIK RGRFSQEEDQ MIVHLHAILG NRWSAIASHL PRRTDNEIKN YWNTHLRKRL 120 LQMGIDPVTH KSTTAEELIL DNILPGLKPV VSSNLSHMSQ WEIARAEAEA RLSRQSSLNS 180 SSNLQHSHQD FNLNTKTTPY QGASTNFMST WKARVAETLR PDFGTVELDK VPANPVNLQA 240 FFQDWESLQA PQVLAKPFSE YNCIDCPDLS SGAASEVVSP QYSCEGSQCT MPGSSTIFPT 300 PAQINERQFV SQCDFFSSPR IDLKSRLSIG PSTMFPLSRM NSNSDSQSLS AADSNLNYSG 360 ACADTDNQFS PTSTLHAPDH DSSYTNSPCG SSNSGSECFD LLEQTFPLVN QNNIIKPSRS 420 NIVFPSGQTF WSRQQVAMMD GFQLDSYFLP ELELASLKPQ SFNVGSTAPI LHQVEVPNDI 480 SISHF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-29 | 16 | 120 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: High rates of growth. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372138.1 | 0.0 | myb-related protein Pp1-like | ||||
Swissprot | P80074 | 1e-114 | MYB1_PHYPA; Myb-related protein Pp1 (Fragment) | ||||
TrEMBL | A0A2K1L707 | 0.0 | A0A2K1L707_PHYPA; Uncharacterized protein | ||||
STRING | PP1S45_150V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 2e-76 | myb domain protein 106 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_4970V3.2.p |