PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_41530V3.5.p | ||||||||
Common Name | PHYPADRAFT_233952 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | G2-like | ||||||||
Protein Properties | Length: 332aa MW: 36935.8 Da PI: 6.9692 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.9 | 1.3e-29 | 58 | 111 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++l+WtpeLH++F++a+++LGG++kAtPk+i+++m+ g+t++hvkSHLQ+YR+ Pp3c1_41530V3.5.p 58 QKLKWTPELHQCFMQAIDRLGGQDKATPKRIVQHMNKSGITIAHVKSHLQMYRS 111 89***************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.217 | 54 | 114 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-26 | 55 | 111 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.29E-14 | 56 | 111 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.3E-24 | 58 | 112 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.9E-9 | 59 | 110 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MVLGPDSSHG RNEIGRRVSS RTRHPYSAQT LRISADNSLD EFKRDRANVR PYVRTSTQKL 60 KWTPELHQCF MQAIDRLGGQ DKATPKRIVQ HMNKSGITIA HVKSHLQMYR SGKINADGIS 120 KSAYKIFQDG RWQSNNPGQE GPSEIGRDAE QTTSRVEDVS GNLEFEPAAM ALIQLRDGQS 180 SDPGAFGLDE LRGYPDGQSL HQYGPNTLIG QTRQNLETRE FVPVVGPNDE HLNISVNSPQ 240 ELRYEHEHEH DPSQTSTYRP DSWPSPLSLE TFPSETTTDN SLNATCSPSG RNRKAEEAIV 300 LELTMATRPH RPRPQFSGSP AEATSLNISL V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-15 | 59 | 113 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-15 | 59 | 113 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-15 | 59 | 113 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-15 | 59 | 113 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.2121 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024370607.1 | 0.0 | two-component response regulator ORR24-like | ||||
Refseq | XP_024370616.1 | 0.0 | two-component response regulator ORR24-like | ||||
Refseq | XP_024370623.1 | 0.0 | two-component response regulator ORR24-like | ||||
Refseq | XP_024370634.1 | 0.0 | two-component response regulator ORR24-like | ||||
Refseq | XP_024370643.1 | 0.0 | two-component response regulator ORR24-like | ||||
Refseq | XP_024370652.1 | 0.0 | two-component response regulator ORR24-like | ||||
TrEMBL | A0A2K1LBV1 | 0.0 | A0A2K1LBV1_PHYPA; Uncharacterized protein | ||||
TrEMBL | A9SS29 | 0.0 | A9SS29_PHYPA; Predicted protein | ||||
STRING | PP1S111_87V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 3e-27 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_41530V3.5.p |
Entrez Gene | 5932386 |
Publications ? help Back to Top | |||
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