PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c1_41530V3.3.p

Common Name

PHYPADRAFT_233952

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 332aa MW: 36935.8 Da PI: 6.9692

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c1_41530V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.9	1.3e-29	58	111	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++l+WtpeLH++F++a+++LGG++kAtPk+i+++m+ g+t++hvkSHLQ+YR+ Pp3c1_41530V3.3.p 58 QKLKWTPELHQCFMQAIDRLGGQDKATPKRIVQHMNKSGITIAHVKSHLQMYRS 111 89***************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.217	54	114	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-26	55	111	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.29E-14	56	111	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.3E-24	58	112	IPR006447	Myb domain, plants
Pfam	PF00249	7.9E-9	59	110	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MVLGPDSSHG RNEIGRRVSS RTRHPYSAQT LRISADNSLD EFKRDRANVR PYVRTSTQKL 60 KWTPELHQCF MQAIDRLGGQ DKATPKRIVQ HMNKSGITIA HVKSHLQMYR SGKINADGIS 120 KSAYKIFQDG RWQSNNPGQE GPSEIGRDAE QTTSRVEDVS GNLEFEPAAM ALIQLRDGQS 180 SDPGAFGLDE LRGYPDGQSL HQYGPNTLIG QTRQNLETRE FVPVVGPNDE HLNISVNSPQ 240 ELRYEHEHEH DPSQTSTYRP DSWPSPLSLE TFPSETTTDN SLNATCSPSG RNRKAEEAIV 300 LELTMATRPH RPRPQFSGSP AEATSLNISL V*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-15	59	113	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-15	59	113	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-15	59	113	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-15	59	113	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.2121	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024370607.1	0.0	two-component response regulator ORR24-like
Refseq	XP_024370616.1	0.0	two-component response regulator ORR24-like
Refseq	XP_024370623.1	0.0	two-component response regulator ORR24-like
Refseq	XP_024370634.1	0.0	two-component response regulator ORR24-like
Refseq	XP_024370643.1	0.0	two-component response regulator ORR24-like
Refseq	XP_024370652.1	0.0	two-component response regulator ORR24-like
TrEMBL	A0A2K1LBV1	0.0	A0A2K1LBV1_PHYPA; Uncharacterized protein
TrEMBL	A9SS29	0.0	A9SS29_PHYPA; Predicted protein
STRING	PP1S111_87V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	3e-27	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c1_41530V3.3.p
Entrez Gene	5932386

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]