PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_40750V3.3.p
Common NamePHYPADRAFT_232610
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GATA
Protein Properties Length: 391aa    MW: 42241 Da    PI: 6.6528
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_40750V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.17.8e-16276312135
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cg  +  Tp++Rrgp g++tLCnaCGl+++ kg+
  Pp3c1_40750V3.3.p 276 CVHCGIGErsTPMMRRGPAGPRTLCNACGLMWANKGV 312
                        ****866666************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.0E-10134169IPR010399Tify domain
PROSITE profilePS5132015.151134169IPR010399Tify domain
PfamPF062001.6E-13136168IPR010399Tify domain
PfamPF062032.5E-15201243IPR010402CCT domain
PROSITE profilePS5101713.225201243IPR010402CCT domain
PROSITE profilePS501148.972270318IPR000679Zinc finger, GATA-type
SMARTSM004015.1E-13270323IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-12272320No hitNo description
CDDcd002025.21E-15275318No hitNo description
Gene3DG3DSA:3.30.50.101.4E-15275317IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440276303IPR000679Zinc finger, GATA-type
PfamPF003201.3E-13276312IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MPSEGVDVGG MSDGDHLVHA QSLQLHHNLH PQSLSHGLGH AQHAMREMHV HGHGESEGHG  60
QARGDQQVQD HLEVDQVHNH HGHHGHGMHN KEENGVEVEE HDDDAGDEEG LDEADMHSDG  120
GGNPGDGPTP LAVRTQGSTQ LTLSYQGEVY VFDTVPPKKV QAVLLLLGGR EIPPGMSGVN  180
MFSHHHKGLT ELPARMNMPQ RLASLTRFRE KRKERCYDKK IRYTVRKEVA QRMQRKKGQF  240
ASSRPTQEEG APVANWDGTL APGQTVAPGV HPEVTCVHCG IGERSTPMMR RGPAGPRTLC  300
NACGLMWANK GVLRDLSKNL SITAGGQQQL MLHPQQILQQ QQHQVAGLQG SVDNAPQGVD  360
VQGSQQREGD VQKDMASIVT ADGGPVLAAG *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.31340.0gametophore| protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380115.10.0GATA transcription factor 24-like
SwissprotQ8H1G01e-74GAT28_ARATH; GATA transcription factor 28
TrEMBLA9SRZ20.0A9SRZ2_PHYPA; Predicted protein
STRINGPP1S111_5V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.26e-75ZIM-LIKE 2
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]