PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c1_40040V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 410aa MW: 44948.5 Da PI: 5.8688

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c1_40040V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.4	9.2e-07	286	327	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r RR+ri ++ L+ +P +K++ a++L +A++Y+k Lq Pp3c1_40040V3.1.p 286 ARHRRERISDRVRVLQHFVPGG-----TKMDTASMLDEAIHYVKFLQ 327 699***************87.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.132	277	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-13	282	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.46E-10	283	331	No hit	No description
SMART	SM00353	3.5E-12	283	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-12	283	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MSQSLRANDC SEFPDMEVWL NARTKWSENH DVHAESSVSV PLSFHSDETL ITGAGSLFED 60 SRKEDVTLRP FLKLETMGLC VENQNARLLS ARSAGMVDSS CNEEDISEQA SSVALSVIPS 120 GTVSAADFLD QAPRVDEVAN LYMEADSPHG LLFSTGLQLE TTSRTASHKR VLDDSSEASC 180 MQVADVQSQS RKSPKVQHGP VLLQDDGLQV PVDYVPFVAM AKPSQAHFAI STSATFLPTS 240 PGNVVPAVLF PTPLTLPNVP SMEEIAQTRP KRRNVRISSD PQSVAARHRR ERISDRVRVL 300 QHFVPGGTKM DTASMLDEAI HYVKFLQQQL QAMERISRGG SVMMPEVGYN YNAGRVLDLD 360 YGSHETHPSK SMAPPASQQS VPTRLDKTWA TNPLHSQGLR DPVLQQFCH*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MSQSLRANDC SEFPDMEVWL NARTKWSENH DVHAESSVSV PLSFHSDETL ITGAGSLFED  60
SRKEDVTLRP FLKLETMGLC VENQNARLLS ARSAGMVDSS CNEEDISEQA SSVALSVIPS  120
GTVSAADFLD QAPRVDEVAN LYMEADSPHG LLFSTGLQLE TTSRTASHKR VLDDSSEASC  180
MQVADVQSQS RKSPKVQHGP VLLQDDGLQV PVDYVPFVAM AKPSQAHFAI STSATFLPTS  240
PGNVVPAVLF PTPLTLPNVP SMEEIAQTRP KRRNVRISSD PQSVAARHRR ERISDRVRVL  300
QHFVPGGTKM DTASMLDEAI HYVKFLQQQL QAMERISRGG SVMMPEVGYN YNAGRVLDLD  360
YGSHETHPSK SMAPPASQQS VPTRLDKTWA TNPLHSQGLR DPVLQQFCH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024370203.1	0.0	uncharacterized protein LOC112279736
TrEMBL	A0A2K1LBM0	0.0	A0A2K1LBM0_PHYPA; Uncharacterized protein
STRING	PP1S163_95V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP761	15	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	3e-27	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pp3c1_40040V3.1.p